Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska
The taxonomic foundation of a new regional flora or monograph is the reconciliation of pre-existing names and taxonomic concepts (i.e., variation in usage of those names). This reconciliation is traditionally done manually, but the availability of taxonomic resources online and of text manipulation...
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ftzenodo:oai:zenodo.org:5514984 2024-09-15T18:41:27+00:00 Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska Webb, Campbell Ickert-Bond, Stefanie Cook, Kimberly 2021-09-10 https://doi.org/10.3897/biss.5.74184 unknown Pensoft Publishers https://zenodo.org/communities/biosyslit https://doi.org/10.3897/biss.5.74184 oai:zenodo.org:5514984 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode Biodiversity Information Science and Standards, 5, e74184, (2021-09-10) info:eu-repo/semantics/article 2021 ftzenodo https://doi.org/10.3897/biss.5.74184 2024-07-26T14:14:42Z The taxonomic foundation of a new regional flora or monograph is the reconciliation of pre-existing names and taxonomic concepts (i.e., variation in usage of those names). This reconciliation is traditionally done manually, but the availability of taxonomic resources online and of text manipulation software means that some of the work can now be automated, speeding up the development of new taxonomic products. As a contribution to developing a new Flora of Alaska (floraofalaska.org), we have digitized the main pre-existing flora (Hultén 1968) and combined it with key online taxonomic name sources (Panarctic Flora, Flora of North America, International Plant Names Index - IPNI, Tropicos, Kew's World Checklist of Selected Plant Families), to build a canonical list of names anchored to external Globally Unique Identifiers (GUIDs) (e.g., IPNI URLs). We developed taxonomically-aware fuzzy-matching software ( matchnames , Webb 2020) to identify cognates in different lists. The taxa for which there are variations between different sources in accepted names and synonyms are then flagged for review by taxonomic experts. However, even though names may be consistent across previous monographs and floras, the taxonomic concept (or circumscription) of a name may differ among authors, meaning that the way an accepted name in the flora is applied may be unfamiliar to the users of previous floras. We therefore have begun to manually align taxonomic concepts across five existing floras: Panarctic Flora, Flora of North America, Cody's Flora of the Yukon (Cody 2000), Welsh's Flora (Welsh 1974) and Hultén's Flora (Hultén 1968), analysing usage and recording the Region Connection Calculus (RCC-5) relationships between taxonomic concepts common to each source. So far, we have mapped taxa in 13 genera, containing 557 taxonomic concepts and 482 taxonomic concept relationships. To facilitate this alignment process we developed software ( tcm , Webb 2021) to record publications, names, taxonomic concepts and relationships, and to ... Article in Journal/Newspaper Alaska Yukon Zenodo Biodiversity Information Science and Standards 5 |
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description |
The taxonomic foundation of a new regional flora or monograph is the reconciliation of pre-existing names and taxonomic concepts (i.e., variation in usage of those names). This reconciliation is traditionally done manually, but the availability of taxonomic resources online and of text manipulation software means that some of the work can now be automated, speeding up the development of new taxonomic products. As a contribution to developing a new Flora of Alaska (floraofalaska.org), we have digitized the main pre-existing flora (Hultén 1968) and combined it with key online taxonomic name sources (Panarctic Flora, Flora of North America, International Plant Names Index - IPNI, Tropicos, Kew's World Checklist of Selected Plant Families), to build a canonical list of names anchored to external Globally Unique Identifiers (GUIDs) (e.g., IPNI URLs). We developed taxonomically-aware fuzzy-matching software ( matchnames , Webb 2020) to identify cognates in different lists. The taxa for which there are variations between different sources in accepted names and synonyms are then flagged for review by taxonomic experts. However, even though names may be consistent across previous monographs and floras, the taxonomic concept (or circumscription) of a name may differ among authors, meaning that the way an accepted name in the flora is applied may be unfamiliar to the users of previous floras. We therefore have begun to manually align taxonomic concepts across five existing floras: Panarctic Flora, Flora of North America, Cody's Flora of the Yukon (Cody 2000), Welsh's Flora (Welsh 1974) and Hultén's Flora (Hultén 1968), analysing usage and recording the Region Connection Calculus (RCC-5) relationships between taxonomic concepts common to each source. So far, we have mapped taxa in 13 genera, containing 557 taxonomic concepts and 482 taxonomic concept relationships. To facilitate this alignment process we developed software ( tcm , Webb 2021) to record publications, names, taxonomic concepts and relationships, and to ... |
format |
Article in Journal/Newspaper |
author |
Webb, Campbell Ickert-Bond, Stefanie Cook, Kimberly |
spellingShingle |
Webb, Campbell Ickert-Bond, Stefanie Cook, Kimberly Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska |
author_facet |
Webb, Campbell Ickert-Bond, Stefanie Cook, Kimberly |
author_sort |
Webb, Campbell |
title |
Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska |
title_short |
Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska |
title_full |
Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska |
title_fullStr |
Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska |
title_full_unstemmed |
Integrating Taxonomic Names and Concepts from Paper and Digital Sources for a New Flora of Alaska |
title_sort |
integrating taxonomic names and concepts from paper and digital sources for a new flora of alaska |
publisher |
Pensoft Publishers |
publishDate |
2021 |
url |
https://doi.org/10.3897/biss.5.74184 |
genre |
Alaska Yukon |
genre_facet |
Alaska Yukon |
op_source |
Biodiversity Information Science and Standards, 5, e74184, (2021-09-10) |
op_relation |
https://zenodo.org/communities/biosyslit https://doi.org/10.3897/biss.5.74184 oai:zenodo.org:5514984 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.3897/biss.5.74184 |
container_title |
Biodiversity Information Science and Standards |
container_volume |
5 |
_version_ |
1810485864430567424 |