Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway

While there are extensive macro- and microfossil records of a range of plants and animals from Quaternary records, earthworms and their close relatives among annelids are not preserved as fossils, and therefore we have limited knowledge of their Quaternary distributions. This lack of fossils means t...

Full description

Bibliographic Details
Main Authors: Lammers, Youri, Clarke, Charlotte L., Erséus, Christer, Brown, Antony G., Edwards, Mary E., Gielly, Ludovic, Haflidason, Haflidi, Mangerud, Jan, Rota, Emilia, Svendsen, John Inge, Alsos, Inger Greve
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2019
Subjects:
Online Access:https://doi.org/10.5061/dryad.g0f4hv0
id ftzenodo:oai:zenodo.org:5021862
record_format openpolar
spelling ftzenodo:oai:zenodo.org:5021862 2024-09-15T18:25:54+00:00 Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway Lammers, Youri Clarke, Charlotte L. Erséus, Christer Brown, Antony G. Edwards, Mary E. Gielly, Ludovic Haflidason, Haflidi Mangerud, Jan Rota, Emilia Svendsen, John Inge Alsos, Inger Greve 2019-08-17 https://doi.org/10.5061/dryad.g0f4hv0 unknown Zenodo https://doi.org/10.1111/bor.12363 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.g0f4hv0 oai:zenodo.org:5021862 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode Mammalia clitellates Quaternary Clitellata info:eu-repo/semantics/other 2019 ftzenodo https://doi.org/10.5061/dryad.g0f4hv010.1111/bor.12363 2024-07-27T05:41:24Z While there are extensive macro- and microfossil records of a range of plants and animals from Quaternary records, earthworms and their close relatives among annelids are not preserved as fossils, and therefore we have limited knowledge of their Quaternary distributions. This lack of fossils means that clitellate worms (Annelida) are currently underused in palaeoecological research, even though they can provide valuable information about terrestrial and aquatic environmental conditions. Their DNA might be preserved in sediments, which offers an alternative method for detection. Here we analyse lacustrine sediments from lakes in the Polar Urals, Arctic Russia, covering the period 24,000-1,300 cal. years BP, and NE Norway (10,700-3,300 cal. years BP) using a universal mammal 16S rDNA marker. While mammals were recorded using the marker (reindeer was detected twice in the Polar Urals core at 23,000 and 14,000 cal. years BP, and four times in the Norwegian core at 11,000 cal. years BP and between 3,600-3,300 cal. years BP), worm extracellular DNA "bycatch" was rather high. In this paper we present the first reported worm detection from ancient DNA. Our results demonstrate that both aquatic and terrestrial clitellates can be identified in late-Quaternary lacustrine sediments, and the ecological information retrievable from this group warrants further research with a more targeted approach. FilterBarcoding R script used for the Filtering of the OBITOOLS output. Sample_tag_primer_URAL-Mam Excel file containing the primer tags and sample names for the Polar Urals run. The primer information was used by OBITOOLS to demultiplex the data. Sample_tag_primer_Varanger-MamP007 Excel file containing the primer tags and sample names for the Varanger run. The primer information was used by OBITOOLS to demultiplex the data. URAL-Mam.un.an.C1.L13.obiclean.r5.HpS.M-iden.ann.sort_10_23_1_2_1 The filtered OBITOOLS output for the Polar Urals run. Hubia2-Mammal.ali.uniq.c2.cl.M-iden.ann.sort_10_23_1_2_1 The filtered Varanger OBITOOLS ... Other/Unknown Material Northern Norway Varanger Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
topic Mammalia
clitellates
Quaternary
Clitellata
spellingShingle Mammalia
clitellates
Quaternary
Clitellata
Lammers, Youri
Clarke, Charlotte L.
Erséus, Christer
Brown, Antony G.
Edwards, Mary E.
Gielly, Ludovic
Haflidason, Haflidi
Mangerud, Jan
Rota, Emilia
Svendsen, John Inge
Alsos, Inger Greve
Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
topic_facet Mammalia
clitellates
Quaternary
Clitellata
description While there are extensive macro- and microfossil records of a range of plants and animals from Quaternary records, earthworms and their close relatives among annelids are not preserved as fossils, and therefore we have limited knowledge of their Quaternary distributions. This lack of fossils means that clitellate worms (Annelida) are currently underused in palaeoecological research, even though they can provide valuable information about terrestrial and aquatic environmental conditions. Their DNA might be preserved in sediments, which offers an alternative method for detection. Here we analyse lacustrine sediments from lakes in the Polar Urals, Arctic Russia, covering the period 24,000-1,300 cal. years BP, and NE Norway (10,700-3,300 cal. years BP) using a universal mammal 16S rDNA marker. While mammals were recorded using the marker (reindeer was detected twice in the Polar Urals core at 23,000 and 14,000 cal. years BP, and four times in the Norwegian core at 11,000 cal. years BP and between 3,600-3,300 cal. years BP), worm extracellular DNA "bycatch" was rather high. In this paper we present the first reported worm detection from ancient DNA. Our results demonstrate that both aquatic and terrestrial clitellates can be identified in late-Quaternary lacustrine sediments, and the ecological information retrievable from this group warrants further research with a more targeted approach. FilterBarcoding R script used for the Filtering of the OBITOOLS output. Sample_tag_primer_URAL-Mam Excel file containing the primer tags and sample names for the Polar Urals run. The primer information was used by OBITOOLS to demultiplex the data. Sample_tag_primer_Varanger-MamP007 Excel file containing the primer tags and sample names for the Varanger run. The primer information was used by OBITOOLS to demultiplex the data. URAL-Mam.un.an.C1.L13.obiclean.r5.HpS.M-iden.ann.sort_10_23_1_2_1 The filtered OBITOOLS output for the Polar Urals run. Hubia2-Mammal.ali.uniq.c2.cl.M-iden.ann.sort_10_23_1_2_1 The filtered Varanger OBITOOLS ...
format Other/Unknown Material
author Lammers, Youri
Clarke, Charlotte L.
Erséus, Christer
Brown, Antony G.
Edwards, Mary E.
Gielly, Ludovic
Haflidason, Haflidi
Mangerud, Jan
Rota, Emilia
Svendsen, John Inge
Alsos, Inger Greve
author_facet Lammers, Youri
Clarke, Charlotte L.
Erséus, Christer
Brown, Antony G.
Edwards, Mary E.
Gielly, Ludovic
Haflidason, Haflidi
Mangerud, Jan
Rota, Emilia
Svendsen, John Inge
Alsos, Inger Greve
author_sort Lammers, Youri
title Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_short Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_full Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_fullStr Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_full_unstemmed Data from: Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway
title_sort data from: clitellate worms (annelida) in lateglacial and holocene sedimentary dna records from the polar urals and northern norway
publisher Zenodo
publishDate 2019
url https://doi.org/10.5061/dryad.g0f4hv0
genre Northern Norway
Varanger
genre_facet Northern Norway
Varanger
op_relation https://doi.org/10.1111/bor.12363
https://zenodo.org/communities/dryad
https://doi.org/10.5061/dryad.g0f4hv0
oai:zenodo.org:5021862
op_rights info:eu-repo/semantics/openAccess
Creative Commons Zero v1.0 Universal
https://creativecommons.org/publicdomain/zero/1.0/legalcode
op_doi https://doi.org/10.5061/dryad.g0f4hv010.1111/bor.12363
_version_ 1810466370814476288