Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries
Background: The impressive adaptive radiation of notothenioid fishes in Antarctic waters is generally thought to have been facilitated by an evolutionary key innovation, antifreeze glycoproteins, permitting the rapid evolution of more than 120 species subsequent to the Antarctic glaciation. By way o...
Main Authors: | , , , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
2019
|
Subjects: | |
Online Access: | https://zenodo.org/record/5009656 https://doi.org/10.5061/dryad.c342rg7 |
id |
ftzenodo:oai:zenodo.org:5009656 |
---|---|
record_format |
openpolar |
spelling |
ftzenodo:oai:zenodo.org:5009656 2023-06-06T11:43:48+02:00 Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter 2019-01-03 https://zenodo.org/record/5009656 https://doi.org/10.5061/dryad.c342rg7 unknown https://zenodo.org/communities/dryad https://zenodo.org/record/5009656 https://doi.org/10.5061/dryad.c342rg7 oai:zenodo.org:5009656 info:eu-repo/semantics/openAccess https://creativecommons.org/publicdomain/zero/1.0/legalcode phylogenomic notothenioids info:eu-repo/semantics/other dataset 2019 ftzenodo https://doi.org/10.5061/dryad.c342rg7 2023-04-13T21:30:40Z Background: The impressive adaptive radiation of notothenioid fishes in Antarctic waters is generally thought to have been facilitated by an evolutionary key innovation, antifreeze glycoproteins, permitting the rapid evolution of more than 120 species subsequent to the Antarctic glaciation. By way of contrast, the second-most species-rich notothenioid genus, Patagonotothen, which is nested within the Antarctic clade of Notothenioidei, is almost exclusively found in the non-Antarctic waters of Patagonia. While the drivers of the diversification of Patagonotothen are currently unknown, they are unlikely to be related to antifreeze glycoproteins, given that water temperatures in Patagonia are well above freezing point. Here we performed a phylogenetic analysis based on genome-wide single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (RADseq) in a total of twelve Patagonotothen species. Results: We present a well-supported, time-calibrated phylogenetic hypothesis including closely and distantly related outgroups, confirming the monophyly of the genus Patagonotothen with an origin approximately 3 million year ago and the paraphyly of both the sister genus Lepidonotothen and the family Notothenidae. Our phylogenomic and population genetic analyses highlight a previously unrecognized linage and provide evidence for shared genetic variation between some closely related species. We also provide a mitochondrial phylogeny showing mitonuclear discordance. Conclusions: Based on a combination of phylogenomic and population genomic approaches, we provide evidence for the existence of a new, potentially cryptic, Patagonotothen species, and demonstrate that genetic boundaries between some closely related species are diffuse, likely due to recent introgression and/or incomplete linage sorting. The detected mitonuclear discordance highlights the limitations of relying on a single locus for species barcoding. In addition, our time calibrated phylogenetic hypothesis shows that the early ... Dataset Antarc* Antarctic Zenodo Antarctic Patagonia The Antarctic |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
unknown |
topic |
phylogenomic notothenioids |
spellingShingle |
phylogenomic notothenioids Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
topic_facet |
phylogenomic notothenioids |
description |
Background: The impressive adaptive radiation of notothenioid fishes in Antarctic waters is generally thought to have been facilitated by an evolutionary key innovation, antifreeze glycoproteins, permitting the rapid evolution of more than 120 species subsequent to the Antarctic glaciation. By way of contrast, the second-most species-rich notothenioid genus, Patagonotothen, which is nested within the Antarctic clade of Notothenioidei, is almost exclusively found in the non-Antarctic waters of Patagonia. While the drivers of the diversification of Patagonotothen are currently unknown, they are unlikely to be related to antifreeze glycoproteins, given that water temperatures in Patagonia are well above freezing point. Here we performed a phylogenetic analysis based on genome-wide single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (RADseq) in a total of twelve Patagonotothen species. Results: We present a well-supported, time-calibrated phylogenetic hypothesis including closely and distantly related outgroups, confirming the monophyly of the genus Patagonotothen with an origin approximately 3 million year ago and the paraphyly of both the sister genus Lepidonotothen and the family Notothenidae. Our phylogenomic and population genetic analyses highlight a previously unrecognized linage and provide evidence for shared genetic variation between some closely related species. We also provide a mitochondrial phylogeny showing mitonuclear discordance. Conclusions: Based on a combination of phylogenomic and population genomic approaches, we provide evidence for the existence of a new, potentially cryptic, Patagonotothen species, and demonstrate that genetic boundaries between some closely related species are diffuse, likely due to recent introgression and/or incomplete linage sorting. The detected mitonuclear discordance highlights the limitations of relying on a single locus for species barcoding. In addition, our time calibrated phylogenetic hypothesis shows that the early ... |
format |
Dataset |
author |
Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter |
author_facet |
Ceballos, Santiago Guillermo Roesti, Marius Matschiner, Michael Fernandez, Daniel Alfredo Damerau, Malte Hanel, Reinhold Salzburger, Walter |
author_sort |
Ceballos, Santiago Guillermo |
title |
Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_short |
Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_full |
Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_fullStr |
Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_full_unstemmed |
Data from: Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
title_sort |
data from: phylogenomics of an extra-antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries |
publishDate |
2019 |
url |
https://zenodo.org/record/5009656 https://doi.org/10.5061/dryad.c342rg7 |
geographic |
Antarctic Patagonia The Antarctic |
geographic_facet |
Antarctic Patagonia The Antarctic |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
https://zenodo.org/communities/dryad https://zenodo.org/record/5009656 https://doi.org/10.5061/dryad.c342rg7 oai:zenodo.org:5009656 |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.c342rg7 |
_version_ |
1767958055612317696 |