Data from: Genome-wide analysis of SNPs is consistent with no domestic dog ancestry in the endangered Mexican wolf (Canis lupus baileyi)

• Main Authors: Fitak, Robert R., Rinkevich, Sarah E., Culver, Melanie
• Format: Other/Unknown Material
• Language: unknown
• Published: Zenodo 2018
• Subjects: Canis lupus baileyi; conservation genomics; New Mexico; gray wolves; Conservation genetics and biodiversity; single nucleotide polymorphisms; Arizona; Canis lupus; gray wolf
• Online Access: https://doi.org/10.5061/dryad.g68k008

The Mexican gray wolf (Canis lupus baileyi) was historically distributed throughout the southwestern United States and northern Mexico. Extensive predator removal campaigns during the early 20th century, however, resulted in its eventual extirpation by the mid 1980s. At this time, the Mexican wolf existed only in three separate captive lineages (McBride, Ghost Ranch, and Aragón) descended from three, two, and two founders, respectively. These lineages were merged in 1995 to increase the available genetic variation, and Mexican wolves were reintroduced into Arizona and New Mexico in 1998. Despite the ongoing management of the Mexican wolf population, it has been suggested that a proportion of the Mexican wolf ancestry may be recently derived from hybridization with domestic dogs. In this study, we genotyped 87 Mexican wolves, including individuals from all three captive lineages and cross-lineage wolves, for more than 172,000 single nucleotide polymorphisms (SNPs). We identified levels of genetic variation consistent with the pedigree record and effects of genetic rescue. To identify the potential to detect hybridization with domestic dogs, we compared our Mexican wolf genotypes with those from studies of domestic dogs and other gray wolves. The proportion of Mexican wolf ancestry assigned to domestic dogs was only between 0.06% (SD 0.23%) and 7.8% (SD 1.0%) for global and local ancestry estimates, respectively; and was consistent with simulated levels of incomplete lineage sorting. Overall, our results suggested that Mexican wolves lack biologically significant ancestry with dogs and have useful implications for the conservation and management of this endangered wolf subspecies. README Please read for more information and md5 checksums for the contents of this data repository. MW raw data Raw fluorescence data from the BeadChip analysis. This is RAW, UNPROCESSED data. MW_raw_data.tar.gz Mexican Wolf unprocessed genotypes Raw, Mexican wolf genotypes prior to any filtering in the standard PLINK format. MW.ped ...