Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza
Waterfowl (Anseriformes) and shorebirds (Charadriiformes) are the most common wild vectors of influenza A viruses. Due to their migratory behavior, some may transmit disease over long distances. Migratory connectivity studies can link breeding and nonbreeding grounds while illustrating potential int...
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ftzenodo:oai:zenodo.org:4990702 2024-09-15T18:00:45+00:00 Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza Miller, Mark P. Haig, Susan M. Mullins, Thomas D. Ruan, Luzhang Casler, Bruce Dondua, Alexei Gates, H. River Johnson, J. Matthew Kendall, Steve Tomkovich, Pavel S. Tracy, Diane Valchuk, Olga P. Lanctot, Richard B. 2014-12-09 https://doi.org/10.5061/dryad.4t806 unknown Zenodo https://doi.org/10.1111/eva.12239 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.4t806 oai:zenodo.org:4990702 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode Calidris alpina mtDNA info:eu-repo/semantics/other 2014 ftzenodo https://doi.org/10.5061/dryad.4t80610.1111/eva.12239 2024-07-26T06:41:17Z Waterfowl (Anseriformes) and shorebirds (Charadriiformes) are the most common wild vectors of influenza A viruses. Due to their migratory behavior, some may transmit disease over long distances. Migratory connectivity studies can link breeding and nonbreeding grounds while illustrating potential interactions among populations that may spread diseases. We investigated Dunlin (Calidris alpina), a shorebird with a subspecies (C. a. arcticola) that migrates from nonbreeding areas endemic to avian influenza in eastern Asia to breeding grounds in northern Alaska. Using microsatellites and mitochondrial DNA, we illustrate genetic structure among six subspecies: C. a. arcticola, C. a. pacifica, C. a. hudsonia, C. a. sakhalina, C. a. kistchinski, and C. a. actites. We demonstrate that mitochondrial DNA can help distinguish C. a. arcticola on the Asian nonbreeding grounds with >70% accuracy depending on their relative abundance, indicating that genetics can help determine if C. a. arcticola occurs where they may be exposed to highly pathogenic avian influenza (HPAI) during outbreaks. Our data reveal asymmetric intercontinental gene flow, with some C. a. arcticola short-stopping migration to breed with C. a. pacifica in western Alaska. Because C. a. pacifica migrates along the Pacific Coast of North America, interactions between these subspecies and other taxa provides route for transmission of HPAI into other parts of North America. mtDNA and microsatellite_data A zip file containing two data files plus a third text file containing descriptions of the data files. See file "File annotations.txt" included int the archive for more information. Other/Unknown Material Calidris alpina Alaska Zenodo |
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Calidris alpina mtDNA |
spellingShingle |
Calidris alpina mtDNA Miller, Mark P. Haig, Susan M. Mullins, Thomas D. Ruan, Luzhang Casler, Bruce Dondua, Alexei Gates, H. River Johnson, J. Matthew Kendall, Steve Tomkovich, Pavel S. Tracy, Diane Valchuk, Olga P. Lanctot, Richard B. Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza |
topic_facet |
Calidris alpina mtDNA |
description |
Waterfowl (Anseriformes) and shorebirds (Charadriiformes) are the most common wild vectors of influenza A viruses. Due to their migratory behavior, some may transmit disease over long distances. Migratory connectivity studies can link breeding and nonbreeding grounds while illustrating potential interactions among populations that may spread diseases. We investigated Dunlin (Calidris alpina), a shorebird with a subspecies (C. a. arcticola) that migrates from nonbreeding areas endemic to avian influenza in eastern Asia to breeding grounds in northern Alaska. Using microsatellites and mitochondrial DNA, we illustrate genetic structure among six subspecies: C. a. arcticola, C. a. pacifica, C. a. hudsonia, C. a. sakhalina, C. a. kistchinski, and C. a. actites. We demonstrate that mitochondrial DNA can help distinguish C. a. arcticola on the Asian nonbreeding grounds with >70% accuracy depending on their relative abundance, indicating that genetics can help determine if C. a. arcticola occurs where they may be exposed to highly pathogenic avian influenza (HPAI) during outbreaks. Our data reveal asymmetric intercontinental gene flow, with some C. a. arcticola short-stopping migration to breed with C. a. pacifica in western Alaska. Because C. a. pacifica migrates along the Pacific Coast of North America, interactions between these subspecies and other taxa provides route for transmission of HPAI into other parts of North America. mtDNA and microsatellite_data A zip file containing two data files plus a third text file containing descriptions of the data files. See file "File annotations.txt" included int the archive for more information. |
format |
Other/Unknown Material |
author |
Miller, Mark P. Haig, Susan M. Mullins, Thomas D. Ruan, Luzhang Casler, Bruce Dondua, Alexei Gates, H. River Johnson, J. Matthew Kendall, Steve Tomkovich, Pavel S. Tracy, Diane Valchuk, Olga P. Lanctot, Richard B. |
author_facet |
Miller, Mark P. Haig, Susan M. Mullins, Thomas D. Ruan, Luzhang Casler, Bruce Dondua, Alexei Gates, H. River Johnson, J. Matthew Kendall, Steve Tomkovich, Pavel S. Tracy, Diane Valchuk, Olga P. Lanctot, Richard B. |
author_sort |
Miller, Mark P. |
title |
Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza |
title_short |
Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza |
title_full |
Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza |
title_fullStr |
Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza |
title_full_unstemmed |
Data from: Intercontinental genetic structure and gene flow in Dunlin (Calidris alpina), a potential vector of avian influenza |
title_sort |
data from: intercontinental genetic structure and gene flow in dunlin (calidris alpina), a potential vector of avian influenza |
publisher |
Zenodo |
publishDate |
2014 |
url |
https://doi.org/10.5061/dryad.4t806 |
genre |
Calidris alpina Alaska |
genre_facet |
Calidris alpina Alaska |
op_relation |
https://doi.org/10.1111/eva.12239 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.4t806 oai:zenodo.org:4990702 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.4t80610.1111/eva.12239 |
_version_ |
1810437913957105664 |