Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers.
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleot...
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ftzenodo:oai:zenodo.org:4989037 2024-09-09T19:30:15+00:00 Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart 2017-12-16 https://doi.org/10.5061/dryad.12d36 unknown Zenodo https://doi.org/10.1371/journal.pone.0164327 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.12d36 oai:zenodo.org:4989037 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode Individual Assignment Salmo salar genetic structuring mixed stock analysis Holocene info:eu-repo/semantics/other 2017 ftzenodo https://doi.org/10.5061/dryad.12d3610.1371/journal.pone.0164327 2024-07-26T10:01:56Z Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. Scottish Baseline SNP Panel Raw genotypes for the baseline SNP panel developed for Scotland and NE England. Other/Unknown Material Atlantic salmon Salmo salar Zenodo |
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Individual Assignment Salmo salar genetic structuring mixed stock analysis Holocene |
spellingShingle |
Individual Assignment Salmo salar genetic structuring mixed stock analysis Holocene Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
topic_facet |
Individual Assignment Salmo salar genetic structuring mixed stock analysis Holocene |
description |
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. Scottish Baseline SNP Panel Raw genotypes for the baseline SNP panel developed for Scotland and NE England. |
format |
Other/Unknown Material |
author |
Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart |
author_facet |
Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart |
author_sort |
Gilbey, John |
title |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_short |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_full |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_fullStr |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_full_unstemmed |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_sort |
data from: accuracy of assignment of atlantic salmon (salmo salar l.) to rivers and regions in scotland and northeast england based on single nucleotide polymorphism (snp) markers. |
publisher |
Zenodo |
publishDate |
2017 |
url |
https://doi.org/10.5061/dryad.12d36 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://doi.org/10.1371/journal.pone.0164327 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.12d36 oai:zenodo.org:4989037 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.12d3610.1371/journal.pone.0164327 |
_version_ |
1809899251583418368 |