Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA
We examined sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 290 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of furthe...
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ftzenodo:oai:zenodo.org:4987072 2024-09-15T18:32:58+00:00 Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo 2013-05-07 https://doi.org/10.5061/dryad.rf161 unknown Zenodo https://doi.org/10.1038/hdy.2013.60 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.rf161 oai:zenodo.org:4987072 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode Mus musculus house mouse control region cytochrome b info:eu-repo/semantics/other 2013 ftzenodo https://doi.org/10.5061/dryad.rf16110.1038/hdy.2013.60 2024-07-25T14:52:01Z We examined sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 290 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of further clarifying evolutionary episodes of this species before and after the onset of human-mediated long-distance dispersals. Phylogenetic analysis of the expanded data detected five equally distinct clades, with geographic ranges of northern Eurasia (musculus, MUS), India and Southeast Asia (castaneus, CAS), Nepal (unspecified), western Europe (domesticus, DOM), and Yemen (gentilulus). Our results confirm previous suggestions of Southwestern Asia as the likely place of origin of M. musculus and the region of Iran, Afghanistan, Pakistan, and northern India, specifically as the ancestral homeland of CAS. The divergence of the subspecies lineages and of internal sublineage differentiation within CAS were estimated to be 0.37-0.47 and 0.14-0.23 million years ago (mya), respectively, assuming a split of M. musculus and Mus spretus at 1.7 mya. Of four CAS sublineages detected, only one extends to eastern parts of India, Southeast Asia, Indonesia, Philippines, South China, Northeast China, Primorye, Sakhalin and Japan, implying a dramatic range expansion of CAS out of its homeland during an evolutionary short time, perhaps associated with the spread of agricultural practices. Multiple and non-coincident eastward dispersal events of MUS sublineages to distant geographic areas, such as northern China, Russia, and Korea, are inferred, with the possibility of several different routes. Appendix 1: Cr, 761 taxa A nexus file having mitochondrial control region sequences from 760 house mice (Mus musculus) and one from outgroup taxon Mus macedonicus being modified for alignment. This nexus file was used to construct maximum likelihood trees and Neighbor-Net networks. Appendix_1_Cr_761taxa.nex Appendix 2: Cytb, 173 taxa A nexus file ... Other/Unknown Material Sakhalin Zenodo |
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Mus musculus house mouse control region cytochrome b |
spellingShingle |
Mus musculus house mouse control region cytochrome b Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
topic_facet |
Mus musculus house mouse control region cytochrome b |
description |
We examined sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 290 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of further clarifying evolutionary episodes of this species before and after the onset of human-mediated long-distance dispersals. Phylogenetic analysis of the expanded data detected five equally distinct clades, with geographic ranges of northern Eurasia (musculus, MUS), India and Southeast Asia (castaneus, CAS), Nepal (unspecified), western Europe (domesticus, DOM), and Yemen (gentilulus). Our results confirm previous suggestions of Southwestern Asia as the likely place of origin of M. musculus and the region of Iran, Afghanistan, Pakistan, and northern India, specifically as the ancestral homeland of CAS. The divergence of the subspecies lineages and of internal sublineage differentiation within CAS were estimated to be 0.37-0.47 and 0.14-0.23 million years ago (mya), respectively, assuming a split of M. musculus and Mus spretus at 1.7 mya. Of four CAS sublineages detected, only one extends to eastern parts of India, Southeast Asia, Indonesia, Philippines, South China, Northeast China, Primorye, Sakhalin and Japan, implying a dramatic range expansion of CAS out of its homeland during an evolutionary short time, perhaps associated with the spread of agricultural practices. Multiple and non-coincident eastward dispersal events of MUS sublineages to distant geographic areas, such as northern China, Russia, and Korea, are inferred, with the possibility of several different routes. Appendix 1: Cr, 761 taxa A nexus file having mitochondrial control region sequences from 760 house mice (Mus musculus) and one from outgroup taxon Mus macedonicus being modified for alignment. This nexus file was used to construct maximum likelihood trees and Neighbor-Net networks. Appendix_1_Cr_761taxa.nex Appendix 2: Cytb, 173 taxa A nexus file ... |
format |
Other/Unknown Material |
author |
Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo |
author_facet |
Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo |
author_sort |
Suzuki, Hitoshi |
title |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_short |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_full |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_fullStr |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_full_unstemmed |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_sort |
data from: evolutionary and dispersal history of eurasian wild mice mus musculus clarified by more extensive geographic sampling of mitochondrial dna |
publisher |
Zenodo |
publishDate |
2013 |
url |
https://doi.org/10.5061/dryad.rf161 |
genre |
Sakhalin |
genre_facet |
Sakhalin |
op_relation |
https://doi.org/10.1038/hdy.2013.60 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.rf161 oai:zenodo.org:4987072 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.rf16110.1038/hdy.2013.60 |
_version_ |
1810474724407377920 |