Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of...
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ftzenodo:oai:zenodo.org:4980593 2024-09-15T18:31:43+00:00 Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. 2015-09-17 https://doi.org/10.5061/dryad.29fp0 unknown Zenodo https://doi.org/10.1093/jhered/esv081 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.29fp0 oai:zenodo.org:4980593 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode whole genome analysis Rangifer tarandus Conservation genetics and biodiversity info:eu-repo/semantics/other 2015 ftzenodo https://doi.org/10.5061/dryad.29fp010.1093/jhered/esv081 2024-07-26T16:39:05Z Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. Data_file_Russian_Reindeer Whole-genome analysis of four female samples of Rangifer tarandus inhabiting Russia (Suppl_Bovine_Russian_Reindeer and Suppl_Ovine_Russian_Reindeer): 1-column -Chromosome; 2 column - SNP; 3- column –Control; 4 column-Allele1; 5 column –Allele2; 6 column -Number of homozygous animals1; 7 column -Number of heterozygous animals; 8 column -Number of homozygous animals2; 9 column -Observed heterozygosity; 10 column- Expected heterozygosity; 11-Hardy-Weinberg equilibrium; 12-Number of animals. Other/Unknown Material Rangifer tarandus Zenodo |
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unknown |
topic |
whole genome analysis Rangifer tarandus Conservation genetics and biodiversity |
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whole genome analysis Rangifer tarandus Conservation genetics and biodiversity Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
topic_facet |
whole genome analysis Rangifer tarandus Conservation genetics and biodiversity |
description |
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. Data_file_Russian_Reindeer Whole-genome analysis of four female samples of Rangifer tarandus inhabiting Russia (Suppl_Bovine_Russian_Reindeer and Suppl_Ovine_Russian_Reindeer): 1-column -Chromosome; 2 column - SNP; 3- column –Control; 4 column-Allele1; 5 column –Allele2; 6 column -Number of homozygous animals1; 7 column -Number of heterozygous animals; 8 column -Number of homozygous animals2; 9 column -Observed heterozygosity; 10 column- Expected heterozygosity; 11-Hardy-Weinberg equilibrium; 12-Number of animals. |
format |
Other/Unknown Material |
author |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_facet |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_sort |
Kharzinova, Veronika R. |
title |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_short |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_fullStr |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full_unstemmed |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_sort |
data from: a study of applicability of snp chips developed for bovine and ovine species to whole-genome analysis of reindeer rangifer tarandus |
publisher |
Zenodo |
publishDate |
2015 |
url |
https://doi.org/10.5061/dryad.29fp0 |
genre |
Rangifer tarandus |
genre_facet |
Rangifer tarandus |
op_relation |
https://doi.org/10.1093/jhered/esv081 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.29fp0 oai:zenodo.org:4980593 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.29fp010.1093/jhered/esv081 |
_version_ |
1810473466601668608 |