Data from: Improving structured population models with more realistic representations of non-normal growth

• Main Authors: Peterson, Megan L., Morris, William, Linares, Cristina, Doak, Daniel
• Format: Other/Unknown Material
• Language: unknown
• Published: Zenodo 2019
• Subjects: Bistorta vivipara; Vulpicida pinastri; skewed normal; Polygonum viviparum; matrix model; Asymmetry; Beta regression; integral projection model; quantile regression; population model; skew; Paramuricea clavata
• Online Access: https://doi.org/10.5061/dryad.t6c3573

1. Structured population models are among the most widely used tools in ecology and evolution. Integral projection models (IPMs) use continuous representations of how survival, reproduction, and growth change as functions of state variables such as size, requiring fewer parameters to be estimated than projection matrix models (PPMs). Yet almost all published IPMs make an important assumption: that size-dependent growth transitions are or can be transformed to be normally distributed. In fact, many organisms exhibit highly skewed size transitions. Small individuals can grow more than they can shrink, and large individuals may often shrink more dramatically than they can grow. Yet the implications of such skew for inference from IPMs has not been explored, nor have general methods been developed to incorporate skewed size transitions into IPMs, or deal with other aspects of real growth rates, including bounds on possible growth or shrinkage. 2. Here we develop a flexible approach to modeling skewed growth data using a modified beta regression model. We propose that sizes first be converted to a (0,1) interval by estimating size-dependent minimum and maximum sizes through quantile regression. Transformed data can then be modeled using beta regression with widely available statistical tools. We demonstrate the utility of this approach using demographic data for a long-lived plant, gorgonians, and an epiphytic lichen. Specifically, we compare inferences of population parameters from discrete PPMs to those from IPMs that either assume normality or incorporate skew using beta regression or, alternatively, a skewed normal model. 3. The beta and skewed normal distributions accurately capture the mean, variance, and skew of real growth distributions. Incorporating skewed growth into IPMs decreases population growth and estimated lifespan relative to IPMs that assume normally-distributed growth, and more closely approximate the parameters of PPMs that do not assume a particular growth distribution. A bounded distribution, ...