Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments

Sea ice is an analog environment for several of astrobiology's near-term targets: Mars, Europa, Enceladus, and perhaps other Jovian or Saturnian moons. Microorganisms, both eukaryotic and prokaryotic, remain active within brine channels inside the ice, making it unnecessary to penetrate through...

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Main Authors: Lindensmith, Christian A., Rider, Stephanie, Bedrossian, Manuel, Wallace, J. Kent, Serabyn, Eugene, Showalter, Gordon M., Deming, Jody W., Nadeau, Jay L.
Format: Dataset
Language:unknown
Published: 2017
Subjects:
Online Access:https://zenodo.org/record/4937128
https://doi.org/10.5061/dryad.rc63v
id ftzenodo:oai:zenodo.org:4937128
record_format openpolar
spelling ftzenodo:oai:zenodo.org:4937128 2023-05-15T16:30:31+02:00 Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments Lindensmith, Christian A. Rider, Stephanie Bedrossian, Manuel Wallace, J. Kent Serabyn, Eugene Showalter, Gordon M. Deming, Jody W. Nadeau, Jay L. 2017-01-16 https://zenodo.org/record/4937128 https://doi.org/10.5061/dryad.rc63v unknown doi:10.1371/journal.pone.0147700 https://zenodo.org/communities/dryad https://zenodo.org/record/4937128 https://doi.org/10.5061/dryad.rc63v oai:zenodo.org:4937128 info:eu-repo/semantics/openAccess https://creativecommons.org/publicdomain/zero/1.0/legalcode astrobiology sea ice motility marine microorganisms Holocene info:eu-repo/semantics/other dataset 2017 ftzenodo https://doi.org/10.5061/dryad.rc63v10.1371/journal.pone.0147700 2023-03-11T02:10:11Z Sea ice is an analog environment for several of astrobiology's near-term targets: Mars, Europa, Enceladus, and perhaps other Jovian or Saturnian moons. Microorganisms, both eukaryotic and prokaryotic, remain active within brine channels inside the ice, making it unnecessary to penetrate through to liquid water below in order to detect life. We have developed a submersible digital holographic microscope (DHM) that is capable of resolving individual bacterial cells, and demonstrated its utility for immediately imaging samples taken directly from sea ice at several locations near Nuuk, Greenland. In all samples, the appearance and motility of eukaryotes were conclusive signs of life. The appearance of prokaryotic cells alone was not sufficient to confirm life, but when prokaryotic motility occurred, it was rapid and conclusive. Warming the samples to above-freezing temperatures or supplementing with serine increased the number of motile cells and the speed of motility; supplementing with serine also stimulated chemotaxis. These results show that DHM is a useful technique for detection of active organisms in extreme environments, and that motility may be used as a biosignature in the liquid brines that persist in ice. These findings have important implications for the design of missions to icy environments and suggest ways in which DHM imaging may be integrated with chemical life-detection suites in order to create more conclusive life detection packages. Chemotaxis Middle ChamberHolograms of Malene Bay brine sample exposed to a bottom-to-top serine gradient (data file 2015.03.30 06-28) Data for Fig. 9 B, C in paper and Video S9.Holograms.zipChemotaxis Side ChamberBrine sample exposed to a right-to-left serine gradient. Data file 2015.03.30 06-14. Data for Fig. 9 A in paper.201503300614.zipSeawater at +4CMalene Bay seawater kept overnight at +4 C with the addition of 1/2 strength 2216 marine medium. File 2015.03.30 05-58. Data for Figures 7 and 8E in paper and Videos 4 and 7.201503300558.zipBrine at +4 CMalene Bay ... Dataset Greenland Nuuk Sea ice Zenodo Greenland Nuuk ENVELOPE(-52.150,-52.150,68.717,68.717)
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
topic astrobiology
sea ice
motility
marine microorganisms
Holocene
spellingShingle astrobiology
sea ice
motility
marine microorganisms
Holocene
Lindensmith, Christian A.
Rider, Stephanie
Bedrossian, Manuel
Wallace, J. Kent
Serabyn, Eugene
Showalter, Gordon M.
Deming, Jody W.
Nadeau, Jay L.
Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
topic_facet astrobiology
sea ice
motility
marine microorganisms
Holocene
description Sea ice is an analog environment for several of astrobiology's near-term targets: Mars, Europa, Enceladus, and perhaps other Jovian or Saturnian moons. Microorganisms, both eukaryotic and prokaryotic, remain active within brine channels inside the ice, making it unnecessary to penetrate through to liquid water below in order to detect life. We have developed a submersible digital holographic microscope (DHM) that is capable of resolving individual bacterial cells, and demonstrated its utility for immediately imaging samples taken directly from sea ice at several locations near Nuuk, Greenland. In all samples, the appearance and motility of eukaryotes were conclusive signs of life. The appearance of prokaryotic cells alone was not sufficient to confirm life, but when prokaryotic motility occurred, it was rapid and conclusive. Warming the samples to above-freezing temperatures or supplementing with serine increased the number of motile cells and the speed of motility; supplementing with serine also stimulated chemotaxis. These results show that DHM is a useful technique for detection of active organisms in extreme environments, and that motility may be used as a biosignature in the liquid brines that persist in ice. These findings have important implications for the design of missions to icy environments and suggest ways in which DHM imaging may be integrated with chemical life-detection suites in order to create more conclusive life detection packages. Chemotaxis Middle ChamberHolograms of Malene Bay brine sample exposed to a bottom-to-top serine gradient (data file 2015.03.30 06-28) Data for Fig. 9 B, C in paper and Video S9.Holograms.zipChemotaxis Side ChamberBrine sample exposed to a right-to-left serine gradient. Data file 2015.03.30 06-14. Data for Fig. 9 A in paper.201503300614.zipSeawater at +4CMalene Bay seawater kept overnight at +4 C with the addition of 1/2 strength 2216 marine medium. File 2015.03.30 05-58. Data for Figures 7 and 8E in paper and Videos 4 and 7.201503300558.zipBrine at +4 CMalene Bay ...
format Dataset
author Lindensmith, Christian A.
Rider, Stephanie
Bedrossian, Manuel
Wallace, J. Kent
Serabyn, Eugene
Showalter, Gordon M.
Deming, Jody W.
Nadeau, Jay L.
author_facet Lindensmith, Christian A.
Rider, Stephanie
Bedrossian, Manuel
Wallace, J. Kent
Serabyn, Eugene
Showalter, Gordon M.
Deming, Jody W.
Nadeau, Jay L.
author_sort Lindensmith, Christian A.
title Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
title_short Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
title_full Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
title_fullStr Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
title_full_unstemmed Data from: A submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
title_sort data from: a submersible, off-axis holographic microscope for detection of microbial motility and morphology in aqueous and icy environments
publishDate 2017
url https://zenodo.org/record/4937128
https://doi.org/10.5061/dryad.rc63v
long_lat ENVELOPE(-52.150,-52.150,68.717,68.717)
geographic Greenland
Nuuk
geographic_facet Greenland
Nuuk
genre Greenland
Nuuk
Sea ice
genre_facet Greenland
Nuuk
Sea ice
op_relation doi:10.1371/journal.pone.0147700
https://zenodo.org/communities/dryad
https://zenodo.org/record/4937128
https://doi.org/10.5061/dryad.rc63v
oai:zenodo.org:4937128
op_rights info:eu-repo/semantics/openAccess
https://creativecommons.org/publicdomain/zero/1.0/legalcode
op_doi https://doi.org/10.5061/dryad.rc63v10.1371/journal.pone.0147700
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