Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types

1. New methods for species distribution models (SDMs) utilise presence‐absence (PA) data to correct the sampling bias of presence‐only (PO) data in a spatial point process setting. These have been shown to improve species estimates when both data sets are large and dense. However, is a PA data set t...

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Main Authors: Peel, Samantha L., Hill, Nicole A., Foster, Scott D., Wotherspoon, Simon J., Ghiglione, Claudio, Schiaparelli, Stefano
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2019
Subjects:
Online Access:https://doi.org/10.5061/dryad.2226v8m
id ftzenodo:oai:zenodo.org:4932966
record_format openpolar
spelling ftzenodo:oai:zenodo.org:4932966 2024-09-15T18:37:24+00:00 Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types Peel, Samantha L. Hill, Nicole A. Foster, Scott D. Wotherspoon, Simon J. Ghiglione, Claudio Schiaparelli, Stefano 2019-05-31 https://doi.org/10.5061/dryad.2226v8m unknown Zenodo https://doi.org/10.1111/2041-210x.13196 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.2226v8m oai:zenodo.org:4932966 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode Southern Ocean Mollusca presence‐absence data sampling bias presence‐only data Poisson point processes info:eu-repo/semantics/other 2019 ftzenodo https://doi.org/10.5061/dryad.2226v8m10.1111/2041-210x.13196 2024-07-25T08:19:15Z 1. New methods for species distribution models (SDMs) utilise presence‐absence (PA) data to correct the sampling bias of presence‐only (PO) data in a spatial point process setting. These have been shown to improve species estimates when both data sets are large and dense. However, is a PA data set that is smaller and patchier than hitherto examined able to do the same? Furthermore, when both data sets are relatively small, is there enough information contained within them to produce a useful estimate of species' distributions? These attributes are common in many applications. 2. A stochastic simulation was conducted to assess the ability of a pooled data SDM to estimate the distribution of species from increasingly sparser and patchier data sets. The simulated data sets were varied by changing the number of presence‐absence sample locations, the degree of patchiness of these locations, the number of PO observations, and the level of sampling bias within the PO observations. The performance of the pooled data SDM was compared to a PA SDM and a PO SDM to assess the strengths and limitations of each SDM. 3. The pooled data SDM successfully removed the sampling bias from the PO observations even when the presence‐absence data was sparse and patchy, and the PO observations formed the majority of the data. The pooled data SDM was, in general, more accurate and more precise than either the PA SDM or the PO SDM. All SDMs were more precise for the species responses than they were for the covariate coefficients. 4. The emerging SDM methodology that pools PO and PA data will facilitate more certainty around species' distribution estimates, which in turn will allow more relevant and concise management and policy decisions to be enacted. This work shows that it is possible to achieve this result even in relatively data‐poor regions. Species List Species list for Dryad.csv Other/Unknown Material Southern Ocean Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
topic Southern Ocean Mollusca
presence‐absence data
sampling bias
presence‐only data
Poisson point processes
spellingShingle Southern Ocean Mollusca
presence‐absence data
sampling bias
presence‐only data
Poisson point processes
Peel, Samantha L.
Hill, Nicole A.
Foster, Scott D.
Wotherspoon, Simon J.
Ghiglione, Claudio
Schiaparelli, Stefano
Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
topic_facet Southern Ocean Mollusca
presence‐absence data
sampling bias
presence‐only data
Poisson point processes
description 1. New methods for species distribution models (SDMs) utilise presence‐absence (PA) data to correct the sampling bias of presence‐only (PO) data in a spatial point process setting. These have been shown to improve species estimates when both data sets are large and dense. However, is a PA data set that is smaller and patchier than hitherto examined able to do the same? Furthermore, when both data sets are relatively small, is there enough information contained within them to produce a useful estimate of species' distributions? These attributes are common in many applications. 2. A stochastic simulation was conducted to assess the ability of a pooled data SDM to estimate the distribution of species from increasingly sparser and patchier data sets. The simulated data sets were varied by changing the number of presence‐absence sample locations, the degree of patchiness of these locations, the number of PO observations, and the level of sampling bias within the PO observations. The performance of the pooled data SDM was compared to a PA SDM and a PO SDM to assess the strengths and limitations of each SDM. 3. The pooled data SDM successfully removed the sampling bias from the PO observations even when the presence‐absence data was sparse and patchy, and the PO observations formed the majority of the data. The pooled data SDM was, in general, more accurate and more precise than either the PA SDM or the PO SDM. All SDMs were more precise for the species responses than they were for the covariate coefficients. 4. The emerging SDM methodology that pools PO and PA data will facilitate more certainty around species' distribution estimates, which in turn will allow more relevant and concise management and policy decisions to be enacted. This work shows that it is possible to achieve this result even in relatively data‐poor regions. Species List Species list for Dryad.csv
format Other/Unknown Material
author Peel, Samantha L.
Hill, Nicole A.
Foster, Scott D.
Wotherspoon, Simon J.
Ghiglione, Claudio
Schiaparelli, Stefano
author_facet Peel, Samantha L.
Hill, Nicole A.
Foster, Scott D.
Wotherspoon, Simon J.
Ghiglione, Claudio
Schiaparelli, Stefano
author_sort Peel, Samantha L.
title Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_short Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_full Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_fullStr Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_full_unstemmed Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_sort data from: reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
publisher Zenodo
publishDate 2019
url https://doi.org/10.5061/dryad.2226v8m
genre Southern Ocean
genre_facet Southern Ocean
op_relation https://doi.org/10.1111/2041-210x.13196
https://zenodo.org/communities/dryad
https://doi.org/10.5061/dryad.2226v8m
oai:zenodo.org:4932966
op_rights info:eu-repo/semantics/openAccess
Creative Commons Zero v1.0 Universal
https://creativecommons.org/publicdomain/zero/1.0/legalcode
op_doi https://doi.org/10.5061/dryad.2226v8m10.1111/2041-210x.13196
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