Visualizing DNA folding and RNA in embryos at single-cell resolution
See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed...
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ftzenodo:oai:zenodo.org:4741214 2023-06-06T11:58:20+02:00 Visualizing DNA folding and RNA in embryos at single-cell resolution Leslie J. Mateo Sedona E. Murphy Antonina Hafner Isaac S. Cinquini Carly A. Walker Alistair N. Boettiger 2019-03-18 https://zenodo.org/record/4741214 https://doi.org/10.5281/zenodo.4741214 eng eng doi:10.1038/s41586-019-1035-4 doi:10.5281/zenodo.4741213 https://zenodo.org/record/4741214 https://doi.org/10.5281/zenodo.4741214 oai:zenodo.org:4741214 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/legalcode ORCA super-resolution 3D genome spatial omics info:eu-repo/semantics/other dataset 2019 ftzenodo https://doi.org/10.5281/zenodo.474121410.1038/s41586-019-1035-410.5281/zenodo.4741213 2023-04-13T22:08:14Z See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed by cell ID number, embryo ID number, embryo segment type ID number, brightness, and genomic position. The expression level of 29 RNA targets in the corresponding cells are indexed in the accompanying rnaData document. The cell ID number can be used to link the RNA expression and DNA structure from the same cells. RNA expression is provided in molecule counts per cell for cytoplasmic mRNA targets, and in arbitrary brightness units for intronic RNA targets. Dataset Orca Zenodo |
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English |
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ORCA super-resolution 3D genome spatial omics |
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ORCA super-resolution 3D genome spatial omics Leslie J. Mateo Sedona E. Murphy Antonina Hafner Isaac S. Cinquini Carly A. Walker Alistair N. Boettiger Visualizing DNA folding and RNA in embryos at single-cell resolution |
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ORCA super-resolution 3D genome spatial omics |
description |
See: https://www.nature.com/articles/s41586-019-1035-4 for a description of the approach Dataset organization: The dnaData files contain 3D chromatin paths measured using Optical Reconstruction of Chromatin Architecture are recorded in nanometers, (x,y,z positions). Individual paths are also indexed by cell ID number, embryo ID number, embryo segment type ID number, brightness, and genomic position. The expression level of 29 RNA targets in the corresponding cells are indexed in the accompanying rnaData document. The cell ID number can be used to link the RNA expression and DNA structure from the same cells. RNA expression is provided in molecule counts per cell for cytoplasmic mRNA targets, and in arbitrary brightness units for intronic RNA targets. |
format |
Dataset |
author |
Leslie J. Mateo Sedona E. Murphy Antonina Hafner Isaac S. Cinquini Carly A. Walker Alistair N. Boettiger |
author_facet |
Leslie J. Mateo Sedona E. Murphy Antonina Hafner Isaac S. Cinquini Carly A. Walker Alistair N. Boettiger |
author_sort |
Leslie J. Mateo |
title |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_short |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_full |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_fullStr |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_full_unstemmed |
Visualizing DNA folding and RNA in embryos at single-cell resolution |
title_sort |
visualizing dna folding and rna in embryos at single-cell resolution |
publishDate |
2019 |
url |
https://zenodo.org/record/4741214 https://doi.org/10.5281/zenodo.4741214 |
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Orca |
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Orca |
op_relation |
doi:10.1038/s41586-019-1035-4 doi:10.5281/zenodo.4741213 https://zenodo.org/record/4741214 https://doi.org/10.5281/zenodo.4741214 oai:zenodo.org:4741214 |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.5281/zenodo.474121410.1038/s41586-019-1035-410.5281/zenodo.4741213 |
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1767966937025871872 |