Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865
Figure 4 A maximum likelihood tree of the 16S rRNA haplotypes found in cave and surface specimens. B minimum spanning haplotype network. Most similar sequences obtained in GenBank through BLAST analyses plus a sequence of C. cognatus from Willsey Brook, NY, are also included in the trees. Two distin...
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ftzenodo:oai:zenodo.org:4703494 2024-09-15T18:02:58+00:00 Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 Espinasa, Luis Smith, Drake M. Lindquist, Julianna M. 2021-04-20 https://doi.org/10.3897/subtbiol.38.60865.figure4 unknown Zenodo https://doi.org/10.3897/subtbiol.38.60865 https://zenodo.org/communities/biosyslit https://doi.org/10.3897/subtbiol.38.60865.figure4 oai:zenodo.org:4703494 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode Animalia Chordata Actinopterygii Scorpaeniformes Cottidae Cottus Cottus cognatus Cottus bairdii Cave hybrid Speciation stygobite troglobite info:eu-repo/semantics/other 2021 ftzenodo https://doi.org/10.3897/subtbiol.38.60865.figure410.3897/subtbiol.38.60865 2024-07-25T16:58:52Z Figure 4 A maximum likelihood tree of the 16S rRNA haplotypes found in cave and surface specimens. B minimum spanning haplotype network. Most similar sequences obtained in GenBank through BLAST analyses plus a sequence of C. cognatus from Willsey Brook, NY, are also included in the trees. Two distinct lineages were identified; one that includes C. bairdii specimens and one that includes C. cognatus. Cave haplotypes within the C. bairdii clade are identified by numerals (1–2) and Cave and Antes Creek haplotypes within the C. cognatus clade are identified by letters (A–D). Notice that cave individuals are found within both lineages. Despite being only 445 m apart, some haplotypes are present exclusively in cave individuals and not found in the Antes Spring population. Loose Tooth cave specimens had haplotype 2 and A. Other/Unknown Material Cottus cognatus Zenodo |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
unknown |
topic |
Animalia Chordata Actinopterygii Scorpaeniformes Cottidae Cottus Cottus cognatus Cottus bairdii Cave hybrid Speciation stygobite troglobite |
spellingShingle |
Animalia Chordata Actinopterygii Scorpaeniformes Cottidae Cottus Cottus cognatus Cottus bairdii Cave hybrid Speciation stygobite troglobite Espinasa, Luis Smith, Drake M. Lindquist, Julianna M. Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
topic_facet |
Animalia Chordata Actinopterygii Scorpaeniformes Cottidae Cottus Cottus cognatus Cottus bairdii Cave hybrid Speciation stygobite troglobite |
description |
Figure 4 A maximum likelihood tree of the 16S rRNA haplotypes found in cave and surface specimens. B minimum spanning haplotype network. Most similar sequences obtained in GenBank through BLAST analyses plus a sequence of C. cognatus from Willsey Brook, NY, are also included in the trees. Two distinct lineages were identified; one that includes C. bairdii specimens and one that includes C. cognatus. Cave haplotypes within the C. bairdii clade are identified by numerals (1–2) and Cave and Antes Creek haplotypes within the C. cognatus clade are identified by letters (A–D). Notice that cave individuals are found within both lineages. Despite being only 445 m apart, some haplotypes are present exclusively in cave individuals and not found in the Antes Spring population. Loose Tooth cave specimens had haplotype 2 and A. |
format |
Other/Unknown Material |
author |
Espinasa, Luis Smith, Drake M. Lindquist, Julianna M. |
author_facet |
Espinasa, Luis Smith, Drake M. Lindquist, Julianna M. |
author_sort |
Espinasa, Luis |
title |
Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
title_short |
Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
title_full |
Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
title_fullStr |
Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
title_full_unstemmed |
Figure 4 from: Espinasa L, Smith DM, Lindquist JM (2021) The Pennsylvania grotto sculpin: population genetics. Subterranean Biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
title_sort |
figure 4 from: espinasa l, smith dm, lindquist jm (2021) the pennsylvania grotto sculpin: population genetics. subterranean biology 38: 47-63. https://doi.org/10.3897/subtbiol.38.60865 |
publisher |
Zenodo |
publishDate |
2021 |
url |
https://doi.org/10.3897/subtbiol.38.60865.figure4 |
genre |
Cottus cognatus |
genre_facet |
Cottus cognatus |
op_relation |
https://doi.org/10.3897/subtbiol.38.60865 https://zenodo.org/communities/biosyslit https://doi.org/10.3897/subtbiol.38.60865.figure4 oai:zenodo.org:4703494 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.3897/subtbiol.38.60865.figure410.3897/subtbiol.38.60865 |
_version_ |
1810440502714040320 |