Origin and fate of supergenes in Atlantic cod
Input and output files for analyses of divergence times of Gadinae withStarBEAST2 gadinae_starbeast_alignments.tgz gadinae_starbeast.xml gadinae_starbeast.log gadinae_starbeast.trees gadinae_starbeast.tre Input and output files for analyses of divergence times and introgression among Gadus , Arctoga...
Main Authors: | , , , , , , , , , |
---|---|
Format: | Other/Unknown Material |
Language: | unknown |
Published: |
Zenodo
2021
|
Subjects: | |
Online Access: | https://doi.org/10.5281/zenodo.4560275 |
id |
ftzenodo:oai:zenodo.org:4560275 |
---|---|
record_format |
openpolar |
spelling |
ftzenodo:oai:zenodo.org:4560275 2024-09-15T17:55:23+00:00 Origin and fate of supergenes in Atlantic cod Matschiner, Michael Barth, Julia Maria Isis Tørresen, Ole Kristian Star, Bastiaan Baalsrud, Helle Tessand Brieuc, Marine Servane Ono Pampoulie, Christophe Bradbury Jakobsen Jentoft 2021-08-01 https://doi.org/10.5281/zenodo.4560275 unknown Zenodo https://doi.org/10.5281/zenodo.4560274 https://doi.org/10.5281/zenodo.4560275 oai:zenodo.org:4560275 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode Supergene Inversion Introgression Gene conversion Double crossover Selection Atlantic cod info:eu-repo/semantics/other 2021 ftzenodo https://doi.org/10.5281/zenodo.456027510.5281/zenodo.4560274 2024-07-26T22:31:20Z Input and output files for analyses of divergence times of Gadinae withStarBEAST2 gadinae_starbeast_alignments.tgz gadinae_starbeast.xml gadinae_starbeast.log gadinae_starbeast.trees gadinae_starbeast.tre Input and output files for analyses of divergence times and introgression among Gadus , Arctogadus , and Boreogadus with AIM gadus_arctogadus_boreogadus_aim_alignments.tgz gadus_arctogadus_boreogadus_aim.xml gadus_arctogadus_boreogadus_aim.log gadus_arctogadus_boreogadus_aim.trees gadus_arctogadus_boreogadus_aim_bpp0763.tre gadus_arctogadus_boreogadus_aim_bpp0234.tre Dataset used for analyses ofintrogression among Gadus , Arctogadus , and Boreogadus with Dsuite gadus_arctogadus_boreogadus_dsuite.vcf.gz Alignmentsand output trees for analyses of tree-based signals of introgression among Gadus , Arctogadus , and Boreogadus with IQ-TREE gadus_arctogadus_boreogadus_iqtree_alignments.tgz gadus_arctogadus_boreogadus_iqtree_trees.tgz Datasets used for supergene-specificanalyses of linkage disequilibrium in Gadus morhua with PLINK gadus_morhua_supergene_lg01_plink.map gadus_morhua_supergene_lg01_plink.ped gadus_morhua_supergene_lg02_plink.map gadus_morhua_supergene_lg02_plink.ped gadus_morhua_supergene_lg07_plink.map gadus_morhua_supergene_lg07_plink.ped gadus_morhua_supergene_lg12_plink.map gadus_morhua_supergene_lg12_plink.ped Input and output files for analyses of divergence times among Gadus morhua populations with SNAPP gadus_morhua_outside_supergenes_snapp.vcf.gz gadus_morhua_outside_supergenes_snapp.xml gadus_morhua_outside_supergenes_snapp.log gadus_morhua_outside_supergenes_snapp.tre gadus_morhua_outside_supergenes_snapp.trees Dataset used for analyses ofintrogression among Gadus morhua populationswith Dsuite gadus_morhua_outside_supergenes_dsuite.vcf.gz Dataset used for analyses ofdemograpy of Gadus morhua populations with Relate gadus_morhua_outside_supergenes_relate.vcf.gz Input and output files for supergene-specific analyses of divergence times among Gadus morhua populations with SNAPP ... Other/Unknown Material atlantic cod Gadus morhua Zenodo |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
unknown |
topic |
Supergene Inversion Introgression Gene conversion Double crossover Selection Atlantic cod |
spellingShingle |
Supergene Inversion Introgression Gene conversion Double crossover Selection Atlantic cod Matschiner, Michael Barth, Julia Maria Isis Tørresen, Ole Kristian Star, Bastiaan Baalsrud, Helle Tessand Brieuc, Marine Servane Ono Pampoulie, Christophe Bradbury Jakobsen Jentoft Origin and fate of supergenes in Atlantic cod |
topic_facet |
Supergene Inversion Introgression Gene conversion Double crossover Selection Atlantic cod |
description |
Input and output files for analyses of divergence times of Gadinae withStarBEAST2 gadinae_starbeast_alignments.tgz gadinae_starbeast.xml gadinae_starbeast.log gadinae_starbeast.trees gadinae_starbeast.tre Input and output files for analyses of divergence times and introgression among Gadus , Arctogadus , and Boreogadus with AIM gadus_arctogadus_boreogadus_aim_alignments.tgz gadus_arctogadus_boreogadus_aim.xml gadus_arctogadus_boreogadus_aim.log gadus_arctogadus_boreogadus_aim.trees gadus_arctogadus_boreogadus_aim_bpp0763.tre gadus_arctogadus_boreogadus_aim_bpp0234.tre Dataset used for analyses ofintrogression among Gadus , Arctogadus , and Boreogadus with Dsuite gadus_arctogadus_boreogadus_dsuite.vcf.gz Alignmentsand output trees for analyses of tree-based signals of introgression among Gadus , Arctogadus , and Boreogadus with IQ-TREE gadus_arctogadus_boreogadus_iqtree_alignments.tgz gadus_arctogadus_boreogadus_iqtree_trees.tgz Datasets used for supergene-specificanalyses of linkage disequilibrium in Gadus morhua with PLINK gadus_morhua_supergene_lg01_plink.map gadus_morhua_supergene_lg01_plink.ped gadus_morhua_supergene_lg02_plink.map gadus_morhua_supergene_lg02_plink.ped gadus_morhua_supergene_lg07_plink.map gadus_morhua_supergene_lg07_plink.ped gadus_morhua_supergene_lg12_plink.map gadus_morhua_supergene_lg12_plink.ped Input and output files for analyses of divergence times among Gadus morhua populations with SNAPP gadus_morhua_outside_supergenes_snapp.vcf.gz gadus_morhua_outside_supergenes_snapp.xml gadus_morhua_outside_supergenes_snapp.log gadus_morhua_outside_supergenes_snapp.tre gadus_morhua_outside_supergenes_snapp.trees Dataset used for analyses ofintrogression among Gadus morhua populationswith Dsuite gadus_morhua_outside_supergenes_dsuite.vcf.gz Dataset used for analyses ofdemograpy of Gadus morhua populations with Relate gadus_morhua_outside_supergenes_relate.vcf.gz Input and output files for supergene-specific analyses of divergence times among Gadus morhua populations with SNAPP ... |
format |
Other/Unknown Material |
author |
Matschiner, Michael Barth, Julia Maria Isis Tørresen, Ole Kristian Star, Bastiaan Baalsrud, Helle Tessand Brieuc, Marine Servane Ono Pampoulie, Christophe Bradbury Jakobsen Jentoft |
author_facet |
Matschiner, Michael Barth, Julia Maria Isis Tørresen, Ole Kristian Star, Bastiaan Baalsrud, Helle Tessand Brieuc, Marine Servane Ono Pampoulie, Christophe Bradbury Jakobsen Jentoft |
author_sort |
Matschiner, Michael |
title |
Origin and fate of supergenes in Atlantic cod |
title_short |
Origin and fate of supergenes in Atlantic cod |
title_full |
Origin and fate of supergenes in Atlantic cod |
title_fullStr |
Origin and fate of supergenes in Atlantic cod |
title_full_unstemmed |
Origin and fate of supergenes in Atlantic cod |
title_sort |
origin and fate of supergenes in atlantic cod |
publisher |
Zenodo |
publishDate |
2021 |
url |
https://doi.org/10.5281/zenodo.4560275 |
genre |
atlantic cod Gadus morhua |
genre_facet |
atlantic cod Gadus morhua |
op_relation |
https://doi.org/10.5281/zenodo.4560274 https://doi.org/10.5281/zenodo.4560275 oai:zenodo.org:4560275 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.5281/zenodo.456027510.5281/zenodo.4560274 |
_version_ |
1810431681618771968 |