Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus)
Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecologica...
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ftzenodo:oai:zenodo.org:4304814 2023-05-15T17:32:21+02:00 Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) Pettersson, Mats Andersson, Leif 2020-12-03 https://zenodo.org/record/4304814 https://doi.org/10.5061/dryad.pnvx0k6kr unknown https://zenodo.org/communities/dryad https://zenodo.org/record/4304814 https://doi.org/10.5061/dryad.pnvx0k6kr oai:zenodo.org:4304814 info:eu-repo/semantics/openAccess https://creativecommons.org/publicdomain/zero/1.0/legalcode info:eu-repo/semantics/other dataset 2020 ftzenodo https://doi.org/10.5061/dryad.pnvx0k6kr 2023-03-10T17:46:07Z Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection. The data contains reference allele frequecies for the population samples described in "Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci." Corresponding read-sets can be found in BioProject PRJNA642736. The positions relate to genome assembly version Ch_v2.0.2 (GCA_900700415.1). Dataset North Atlantic Zenodo |
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description |
Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection. The data contains reference allele frequecies for the population samples described in "Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci." Corresponding read-sets can be found in BioProject PRJNA642736. The positions relate to genome assembly version Ch_v2.0.2 (GCA_900700415.1). |
format |
Dataset |
author |
Pettersson, Mats Andersson, Leif |
spellingShingle |
Pettersson, Mats Andersson, Leif Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) |
author_facet |
Pettersson, Mats Andersson, Leif |
author_sort |
Pettersson, Mats |
title |
Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) |
title_short |
Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) |
title_full |
Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) |
title_fullStr |
Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) |
title_full_unstemmed |
Reference allele frequencies for populations pools of Atlantic Herring (Clupea harengus) |
title_sort |
reference allele frequencies for populations pools of atlantic herring (clupea harengus) |
publishDate |
2020 |
url |
https://zenodo.org/record/4304814 https://doi.org/10.5061/dryad.pnvx0k6kr |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_relation |
https://zenodo.org/communities/dryad https://zenodo.org/record/4304814 https://doi.org/10.5061/dryad.pnvx0k6kr oai:zenodo.org:4304814 |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.pnvx0k6kr |
_version_ |
1766130416678338560 |