Transcriptome of the tick Ixodes uriae
Transcriptome of the tick Ixodes uriae. Ticks were collected on three different sites in the arctic region (Grimsey, Gull Island, Hornoya) and in colonies of three different species of sea-birds (common guillemot, kittiwake, puffin). Ticks samples included nymphs (unfed or fed), adult females (unfed...
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ftzenodo:oai:zenodo.org:3922145 2024-09-09T19:24:00+00:00 Transcriptome of the tick Ixodes uriae Rispe, Claude Charrier, N. Pierre Toty, Céline McCoy, Karen 2020-06-29 https://doi.org/10.5281/zenodo.3922145 eng eng Zenodo https://doi.org/10.5281/zenodo.3922144 https://doi.org/10.5281/zenodo.3922145 oai:zenodo.org:3922145 info:eu-repo/semantics/restrictedAccess Ixodes uriae transcriptome info:eu-repo/semantics/other 2020 ftzenodo https://doi.org/10.5281/zenodo.392214510.5281/zenodo.3922144 2024-07-26T11:51:02Z Transcriptome of the tick Ixodes uriae. Ticks were collected on three different sites in the arctic region (Grimsey, Gull Island, Hornoya) and in colonies of three different species of sea-birds (common guillemot, kittiwake, puffin). Ticks samples included nymphs (unfed or fed), adult females (unfed or fed) and adult males, for which RNAs were extracted separately. Twelve libraries (characterized by a combination Site x Host x Condition) were obtained, by pooling between 5 and 30 individuals. Five RNA-Seq de novo assemblies were obtained with Trinity (corresponding to five different Site x Host combinations. Then a meta-assembly was obtained with the runMeta program (DRAP software, SIGENAE). This meta-assembly was annotated with Trinotate. Other/Unknown Material Arctic common guillemot Zenodo Arctic Gull Island ENVELOPE(-55.315,-55.315,49.533,49.533) |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
English |
topic |
Ixodes uriae transcriptome |
spellingShingle |
Ixodes uriae transcriptome Rispe, Claude Charrier, N. Pierre Toty, Céline McCoy, Karen Transcriptome of the tick Ixodes uriae |
topic_facet |
Ixodes uriae transcriptome |
description |
Transcriptome of the tick Ixodes uriae. Ticks were collected on three different sites in the arctic region (Grimsey, Gull Island, Hornoya) and in colonies of three different species of sea-birds (common guillemot, kittiwake, puffin). Ticks samples included nymphs (unfed or fed), adult females (unfed or fed) and adult males, for which RNAs were extracted separately. Twelve libraries (characterized by a combination Site x Host x Condition) were obtained, by pooling between 5 and 30 individuals. Five RNA-Seq de novo assemblies were obtained with Trinity (corresponding to five different Site x Host combinations. Then a meta-assembly was obtained with the runMeta program (DRAP software, SIGENAE). This meta-assembly was annotated with Trinotate. |
format |
Other/Unknown Material |
author |
Rispe, Claude Charrier, N. Pierre Toty, Céline McCoy, Karen |
author_facet |
Rispe, Claude Charrier, N. Pierre Toty, Céline McCoy, Karen |
author_sort |
Rispe, Claude |
title |
Transcriptome of the tick Ixodes uriae |
title_short |
Transcriptome of the tick Ixodes uriae |
title_full |
Transcriptome of the tick Ixodes uriae |
title_fullStr |
Transcriptome of the tick Ixodes uriae |
title_full_unstemmed |
Transcriptome of the tick Ixodes uriae |
title_sort |
transcriptome of the tick ixodes uriae |
publisher |
Zenodo |
publishDate |
2020 |
url |
https://doi.org/10.5281/zenodo.3922145 |
long_lat |
ENVELOPE(-55.315,-55.315,49.533,49.533) |
geographic |
Arctic Gull Island |
geographic_facet |
Arctic Gull Island |
genre |
Arctic common guillemot |
genre_facet |
Arctic common guillemot |
op_relation |
https://doi.org/10.5281/zenodo.3922144 https://doi.org/10.5281/zenodo.3922145 oai:zenodo.org:3922145 |
op_rights |
info:eu-repo/semantics/restrictedAccess |
op_doi |
https://doi.org/10.5281/zenodo.392214510.5281/zenodo.3922144 |
_version_ |
1809893954142863360 |