Supplement of manuscript "microorganisms-746193"
This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193): TITLE: Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities AUTHORS: Stephanie Elferink, Stephanie.westphal@awi.de , A...
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ftzenodo:oai:zenodo.org:3741720 2024-09-15T17:36:34+00:00 Supplement of manuscript "microorganisms-746193" Stephanie Elferink Uwe John Stefan Neuhaus Sylke Wohlrab 2020-04-06 https://doi.org/10.5281/zenodo.3741720 unknown Zenodo https://doi.org/10.5281/zenodo.3741719 https://doi.org/10.5281/zenodo.3741720 oai:zenodo.org:3741720 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode microplancton microeukaryotic community DNA-metabarcoding marine pelagic community phylogenetic placement info:eu-repo/semantics/other 2020 ftzenodo https://doi.org/10.5281/zenodo.374172010.5281/zenodo.3741719 2024-07-25T20:29:45Z This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193): TITLE: Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities AUTHORS: Stephanie Elferink, Stephanie.westphal@awi.de , Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Uwe John, Uwe.John@awi.de , Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity Stefan Neuhaus, Stephan.neuhaus@awi.de , Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Sylke Wohlrab, Sylke.wohlrab@awi.de , Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity JOURNAL: MDPI - microorganisms MS-ID: microorganisms-746193 HOWTO: Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI:10.1016/j.dsr.2016.11.002). CONTENT: reference databases: - Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb - Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb query sequence files: - Alveolata_seqtab_SIGN_dada2.fasta - Alveolata_seqtab_SIGN_dada2.fasta created output folder including the taxonomic annotation: - Alveolata_seqtab_SIGN_dada2.place.out - Stramenopiles_seqtab_SIGN_dada2.place.out text file containing the used commands: - commands Other/Unknown Material Alfred Wegener Institute Zenodo |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
unknown |
topic |
microplancton microeukaryotic community DNA-metabarcoding marine pelagic community phylogenetic placement |
spellingShingle |
microplancton microeukaryotic community DNA-metabarcoding marine pelagic community phylogenetic placement Stephanie Elferink Uwe John Stefan Neuhaus Sylke Wohlrab Supplement of manuscript "microorganisms-746193" |
topic_facet |
microplancton microeukaryotic community DNA-metabarcoding marine pelagic community phylogenetic placement |
description |
This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193): TITLE: Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities AUTHORS: Stephanie Elferink, Stephanie.westphal@awi.de , Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Uwe John, Uwe.John@awi.de , Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity Stefan Neuhaus, Stephan.neuhaus@awi.de , Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research Sylke Wohlrab, Sylke.wohlrab@awi.de , Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity JOURNAL: MDPI - microorganisms MS-ID: microorganisms-746193 HOWTO: Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI:10.1016/j.dsr.2016.11.002). CONTENT: reference databases: - Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb - Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb query sequence files: - Alveolata_seqtab_SIGN_dada2.fasta - Alveolata_seqtab_SIGN_dada2.fasta created output folder including the taxonomic annotation: - Alveolata_seqtab_SIGN_dada2.place.out - Stramenopiles_seqtab_SIGN_dada2.place.out text file containing the used commands: - commands |
format |
Other/Unknown Material |
author |
Stephanie Elferink Uwe John Stefan Neuhaus Sylke Wohlrab |
author_facet |
Stephanie Elferink Uwe John Stefan Neuhaus Sylke Wohlrab |
author_sort |
Stephanie Elferink |
title |
Supplement of manuscript "microorganisms-746193" |
title_short |
Supplement of manuscript "microorganisms-746193" |
title_full |
Supplement of manuscript "microorganisms-746193" |
title_fullStr |
Supplement of manuscript "microorganisms-746193" |
title_full_unstemmed |
Supplement of manuscript "microorganisms-746193" |
title_sort |
supplement of manuscript "microorganisms-746193" |
publisher |
Zenodo |
publishDate |
2020 |
url |
https://doi.org/10.5281/zenodo.3741720 |
genre |
Alfred Wegener Institute |
genre_facet |
Alfred Wegener Institute |
op_relation |
https://doi.org/10.5281/zenodo.3741719 https://doi.org/10.5281/zenodo.3741720 oai:zenodo.org:3741720 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.5281/zenodo.374172010.5281/zenodo.3741719 |
_version_ |
1810490276583571456 |