Diamond-BLASTx of transcriptome contigs of Thalassiosira hyalina and Nitzschia frigida

• Main Author: Sebastian Rokitta
• Format: Dataset
• Language: English
• Published: 2019
• Subjects: Transcriptome assembly; Thalassiosira hyalina; Nitzschia frigida; Trinity; BLAStx; Arctic; Kvernvik; Ocean acidification
• Online Access: https://zenodo.org/record/3362086; https://doi.org/10.5281/zenodo.3362086

This is an annotation file, delivering the Diamond-BLASTx results for the contigs of the transcriptome assemblies of Thalassiosira hyalina and Nitzschia frigida. Theswe originate from a time course experiment, in which these two species were exposed to high light stress and monitored over 120h under low and high pCO2. The corresponding Sequencing data is deposited at the EBI ArrayExpress database under accession number E-MTAB-6999. Contigs were created with Trinity Assembler and are available under DOI:10.5281/zenodo.3361258 The according publication is currently in review (8/6/2019): Higher sensitivity towards light stress and ocean acidification in an Arctic sympagic compared to a pelagic diatom; Author team: Ane C. Kvernvik, Sebastian D. Rokitta, Eva Leu, Lars Harms, Tove M. Gabrielsen, Björn Rost and Clara J. M. Hoppe Do not hesitate to contact the authors if you like more information!