The phylodynamics of the rabies virus in the Russian Federation
Abstract Near complete rabies virus N gene sequences (1,110 nt) were determined for 82 isolates obtained from different regions of Russia between 2008 and 2016. These sequences were analyzed together with 108 representative GenBank sequences from 1977-2016 using the Bayesian coalescent approach. The...
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ftzenodo:oai:zenodo.org:2012896 2024-09-15T18:07:06+00:00 The phylodynamics of the rabies virus in the Russian Federation Deviatkin AA 2018-12-07 https://doi.org/10.1371/journal.pone.0171855 unknown Zenodo https://doi.org/10.1371/journal.pone.0171855 oai:zenodo.org:2012896 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode info:eu-repo/semantics/article 2018 ftzenodo https://doi.org/10.1371/journal.pone.0171855 2024-07-26T18:12:18Z Abstract Near complete rabies virus N gene sequences (1,110 nt) were determined for 82 isolates obtained from different regions of Russia between 2008 and 2016. These sequences were analyzed together with 108 representative GenBank sequences from 1977-2016 using the Bayesian coalescent approach. The timing of the major evolutionary events was estimated. Most of the isolates represented the steppe rabies virus group C, which was found over a vast geographic region from Central Russia to Mongolia and split into three groups (C0-C2) with discrete geographic prevalence. A single strain of the steppe rabies virus lineage was isolated in the far eastern part of Russia (Primorsky Krai), likely as a result of a recent anthropogenic introduction. For the first time the polar rabies virus group A2, previously reported in Alaska, was described in the northern part of European Russia and at the Franz Josef Land. Phylogenetic analysis suggested that all currently circulating rabies virus groups in the Russian Federation were introduced within the few last centuries, with most of the groups spreading in the 20th century. The dating of evolutionary events was highly concordant with the historical epidemiological data. PMID: 28225771 PMCID: PMC5321407 DOI:10.1371/journal.pone.0171855 https://www.sechenov.ru/science_and_innovation/repo/?PAGEN_1=26#134645 Article in Journal/Newspaper Franz Josef Land Alaska Zenodo PLOS ONE 12 2 e0171855 |
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Abstract Near complete rabies virus N gene sequences (1,110 nt) were determined for 82 isolates obtained from different regions of Russia between 2008 and 2016. These sequences were analyzed together with 108 representative GenBank sequences from 1977-2016 using the Bayesian coalescent approach. The timing of the major evolutionary events was estimated. Most of the isolates represented the steppe rabies virus group C, which was found over a vast geographic region from Central Russia to Mongolia and split into three groups (C0-C2) with discrete geographic prevalence. A single strain of the steppe rabies virus lineage was isolated in the far eastern part of Russia (Primorsky Krai), likely as a result of a recent anthropogenic introduction. For the first time the polar rabies virus group A2, previously reported in Alaska, was described in the northern part of European Russia and at the Franz Josef Land. Phylogenetic analysis suggested that all currently circulating rabies virus groups in the Russian Federation were introduced within the few last centuries, with most of the groups spreading in the 20th century. The dating of evolutionary events was highly concordant with the historical epidemiological data. PMID: 28225771 PMCID: PMC5321407 DOI:10.1371/journal.pone.0171855 https://www.sechenov.ru/science_and_innovation/repo/?PAGEN_1=26#134645 |
format |
Article in Journal/Newspaper |
author |
Deviatkin AA |
spellingShingle |
Deviatkin AA The phylodynamics of the rabies virus in the Russian Federation |
author_facet |
Deviatkin AA |
author_sort |
Deviatkin AA |
title |
The phylodynamics of the rabies virus in the Russian Federation |
title_short |
The phylodynamics of the rabies virus in the Russian Federation |
title_full |
The phylodynamics of the rabies virus in the Russian Federation |
title_fullStr |
The phylodynamics of the rabies virus in the Russian Federation |
title_full_unstemmed |
The phylodynamics of the rabies virus in the Russian Federation |
title_sort |
phylodynamics of the rabies virus in the russian federation |
publisher |
Zenodo |
publishDate |
2018 |
url |
https://doi.org/10.1371/journal.pone.0171855 |
genre |
Franz Josef Land Alaska |
genre_facet |
Franz Josef Land Alaska |
op_relation |
https://doi.org/10.1371/journal.pone.0171855 oai:zenodo.org:2012896 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.1371/journal.pone.0171855 |
container_title |
PLOS ONE |
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12 |
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2 |
container_start_page |
e0171855 |
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1810444476112437248 |