Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"

These files include the input data and scripts to reproduce the results from the article "Experimental evidence on the influence of root-associated fungi on plant growth along altitude". The fungal OTU and environmental data are stored in the "data_meta_otu.Rdata" file, and the s...

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Main Authors: Burg Skylar, Ovaskainen Otso, Furneaux Brendan, Ivanova Natalia, Abrahamyan Arusyak, Niittynen Pekka, Somervuo Panu, Abrego Nerea
Format: Article in Journal/Newspaper
Language:unknown
Published: Zenodo 2024
Subjects:
Online Access:https://doi.org/10.5281/zenodo.10995681
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record_format openpolar
spelling ftzenodo:oai:zenodo.org:10995681 2024-09-09T19:26:03+00:00 Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude" Burg Skylar Ovaskainen Otso Furneaux Brendan Ivanova Natalia Abrahamyan Arusyak Niittynen Pekka Somervuo Panu Abrego Nerea 2024-04-19 https://doi.org/10.5281/zenodo.10995681 unknown Zenodo https://doi.org/10.5281/zenodo.8321441 https://doi.org/10.5281/zenodo.10995681 oai:zenodo.org:10995681 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode info:eu-repo/semantics/article 2024 ftzenodo https://doi.org/10.5281/zenodo.1099568110.5281/zenodo.8321441 2024-07-26T22:11:12Z These files include the input data and scripts to reproduce the results from the article "Experimental evidence on the influence of root-associated fungi on plant growth along altitude". The fungal OTU and environmental data are stored in the "data_meta_otu.Rdata" file, and the scripts for performing the joint species distribution modelling described in the article are the files "S1-S6". The scripts should be run in the subsequent order from S1 to S6 in R software. As extensively explained in the main document, we investigated whether variations in root-associated fungal (RAF) community composition along altitudinal gradients influence plant growth at high altitudes, where both plants and fungi face harsher abiotic conditions. These data correspond toa translocation experiment between pairs of high and low altitude populations of Bistorta vivipara along three arctic altitudinal gradients in Kilpisjärvi. To separate the impact of shifting fungal communities from the overall influence of changing abiotic conditions, we used a root barrier to prevent new colonizations by RAF following translocation. To characterize the RAF communities, we applied DNA barcoding to the root samples using the ITS2 region. Through the utilization of joint species distribution modeling, we assessed the relationship between changes in plant functional traits resulting from experimental treatments and the corresponding changes in the RAF communities. Article in Journal/Newspaper Arctic Kilpisjärvi Zenodo Arctic Kilpisjärvi ENVELOPE(20.767,20.767,69.034,69.034)
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
description These files include the input data and scripts to reproduce the results from the article "Experimental evidence on the influence of root-associated fungi on plant growth along altitude". The fungal OTU and environmental data are stored in the "data_meta_otu.Rdata" file, and the scripts for performing the joint species distribution modelling described in the article are the files "S1-S6". The scripts should be run in the subsequent order from S1 to S6 in R software. As extensively explained in the main document, we investigated whether variations in root-associated fungal (RAF) community composition along altitudinal gradients influence plant growth at high altitudes, where both plants and fungi face harsher abiotic conditions. These data correspond toa translocation experiment between pairs of high and low altitude populations of Bistorta vivipara along three arctic altitudinal gradients in Kilpisjärvi. To separate the impact of shifting fungal communities from the overall influence of changing abiotic conditions, we used a root barrier to prevent new colonizations by RAF following translocation. To characterize the RAF communities, we applied DNA barcoding to the root samples using the ITS2 region. Through the utilization of joint species distribution modeling, we assessed the relationship between changes in plant functional traits resulting from experimental treatments and the corresponding changes in the RAF communities.
format Article in Journal/Newspaper
author Burg Skylar
Ovaskainen Otso
Furneaux Brendan
Ivanova Natalia
Abrahamyan Arusyak
Niittynen Pekka
Somervuo Panu
Abrego Nerea
spellingShingle Burg Skylar
Ovaskainen Otso
Furneaux Brendan
Ivanova Natalia
Abrahamyan Arusyak
Niittynen Pekka
Somervuo Panu
Abrego Nerea
Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"
author_facet Burg Skylar
Ovaskainen Otso
Furneaux Brendan
Ivanova Natalia
Abrahamyan Arusyak
Niittynen Pekka
Somervuo Panu
Abrego Nerea
author_sort Burg Skylar
title Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"
title_short Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"
title_full Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"
title_fullStr Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"
title_full_unstemmed Data and scripts for "Experimental evidence that root-associated fungi improve plant growth at high altitude"
title_sort data and scripts for "experimental evidence that root-associated fungi improve plant growth at high altitude"
publisher Zenodo
publishDate 2024
url https://doi.org/10.5281/zenodo.10995681
long_lat ENVELOPE(20.767,20.767,69.034,69.034)
geographic Arctic
Kilpisjärvi
geographic_facet Arctic
Kilpisjärvi
genre Arctic
Kilpisjärvi
genre_facet Arctic
Kilpisjärvi
op_relation https://doi.org/10.5281/zenodo.8321441
https://doi.org/10.5281/zenodo.10995681
oai:zenodo.org:10995681
op_rights info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
op_doi https://doi.org/10.5281/zenodo.1099568110.5281/zenodo.8321441
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