Multispecies IPM for South polar skua and Adelie penguin
Code and data for a multispecies IPM (integrated population model) on South polar skua and Adélie penguin. Please contact me for any question Mail: lise.viollat@protonmail.com Twitter: @LiseViollat Code files : - multispeIPM_skua_adelie_CODE.txt: Code of the multispecies IPM (Bugs language) - Parame...
Main Author: | |
---|---|
Format: | Other/Unknown Material |
Language: | unknown |
Published: |
Zenodo
2024
|
Subjects: | |
Online Access: | https://doi.org/10.5281/zenodo.10953627 |
id |
ftzenodo:oai:zenodo.org:10953627 |
---|---|
record_format |
openpolar |
spelling |
ftzenodo:oai:zenodo.org:10953627 2024-09-15T17:35:05+00:00 Multispecies IPM for South polar skua and Adelie penguin Viollat, Lise 2024-04-10 https://doi.org/10.5281/zenodo.10953627 unknown Zenodo https://doi.org/10.5281/zenodo.10953626 https://doi.org/10.5281/zenodo.10953627 oai:zenodo.org:10953627 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode info:eu-repo/semantics/other 2024 ftzenodo https://doi.org/10.5281/zenodo.1095362710.5281/zenodo.10953626 2024-07-26T23:36:19Z Code and data for a multispecies IPM (integrated population model) on South polar skua and Adélie penguin. Please contact me for any question Mail: lise.viollat@protonmail.com Twitter: @LiseViollat Code files : - multispeIPM_skua_adelie_CODE.txt: Code of the multispecies IPM (Bugs language) - Parameter_init.txt : initialisation of the parameters used for the model Bayesian posterior distributions of the multispecies IPM were approximated with Markov chain Monte Carlo (MCMC) algorithms. Two independent chains MCMC of 30 000 iterations were used, with a burn-in period of 10 000 iterations. Gelman-Rubin convergence diagnostics (Brooks and Gelman, 1998) were below 1.1 for each parameter and the mixing of the chains was satisfactory. The analyses were performed using JAGS (Plummer, 2003; version 4.3.0) and program R (R version 4.0.5). Data files: From 1988 to 2018 - Count_adelie.csv: Number of breeding pairs of Adelie Penguins and Chicks by year - Count_skua.csv : Number of occupied sites, breeder, non breeder and chicks of South polar Skua by year - Skua_matrix.txt: CMR data on South polar skua CMR code: 0 = non-observed 1 = seen as non-breeder 2 = seen as failed breeder 3 = seen as successful breeder with one fledged chick 4 = seen as successful breeder with two chicks fledged chicks 5 = seen in a uncertain state The last column is if the individual as been seen dead (-1) or not (1) - Climat_cova.txt: climatic covariables (Air temperature (AT), sea ice concentration (SIC), sea surface temperature anomalies (ssta), and number of emperor penguin dead chicks - N_immigrant: number of new individuals seen for the first time at the colony by year Other/Unknown Material Adelie penguin Sea ice Zenodo |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
unknown |
description |
Code and data for a multispecies IPM (integrated population model) on South polar skua and Adélie penguin. Please contact me for any question Mail: lise.viollat@protonmail.com Twitter: @LiseViollat Code files : - multispeIPM_skua_adelie_CODE.txt: Code of the multispecies IPM (Bugs language) - Parameter_init.txt : initialisation of the parameters used for the model Bayesian posterior distributions of the multispecies IPM were approximated with Markov chain Monte Carlo (MCMC) algorithms. Two independent chains MCMC of 30 000 iterations were used, with a burn-in period of 10 000 iterations. Gelman-Rubin convergence diagnostics (Brooks and Gelman, 1998) were below 1.1 for each parameter and the mixing of the chains was satisfactory. The analyses were performed using JAGS (Plummer, 2003; version 4.3.0) and program R (R version 4.0.5). Data files: From 1988 to 2018 - Count_adelie.csv: Number of breeding pairs of Adelie Penguins and Chicks by year - Count_skua.csv : Number of occupied sites, breeder, non breeder and chicks of South polar Skua by year - Skua_matrix.txt: CMR data on South polar skua CMR code: 0 = non-observed 1 = seen as non-breeder 2 = seen as failed breeder 3 = seen as successful breeder with one fledged chick 4 = seen as successful breeder with two chicks fledged chicks 5 = seen in a uncertain state The last column is if the individual as been seen dead (-1) or not (1) - Climat_cova.txt: climatic covariables (Air temperature (AT), sea ice concentration (SIC), sea surface temperature anomalies (ssta), and number of emperor penguin dead chicks - N_immigrant: number of new individuals seen for the first time at the colony by year |
format |
Other/Unknown Material |
author |
Viollat, Lise |
spellingShingle |
Viollat, Lise Multispecies IPM for South polar skua and Adelie penguin |
author_facet |
Viollat, Lise |
author_sort |
Viollat, Lise |
title |
Multispecies IPM for South polar skua and Adelie penguin |
title_short |
Multispecies IPM for South polar skua and Adelie penguin |
title_full |
Multispecies IPM for South polar skua and Adelie penguin |
title_fullStr |
Multispecies IPM for South polar skua and Adelie penguin |
title_full_unstemmed |
Multispecies IPM for South polar skua and Adelie penguin |
title_sort |
multispecies ipm for south polar skua and adelie penguin |
publisher |
Zenodo |
publishDate |
2024 |
url |
https://doi.org/10.5281/zenodo.10953627 |
genre |
Adelie penguin Sea ice |
genre_facet |
Adelie penguin Sea ice |
op_relation |
https://doi.org/10.5281/zenodo.10953626 https://doi.org/10.5281/zenodo.10953627 oai:zenodo.org:10953627 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.5281/zenodo.1095362710.5281/zenodo.10953626 |
_version_ |
1810439613478600704 |