Dataset of origins of replication in circular prokaryotic chromosomes

This dataset includes two files downloaded from the DoriC 12.0 database [1] and one file with experimentally verified origins of replications (oriCs). The two DoriC files describe oriCs of circular chromosomes predicted with Ori-Finder on complete and chromosome level assemblies. The experimental_da...

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Main Author: van Meel, Zoya
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2024
Subjects:
Orca
Online Access:https://doi.org/10.5281/zenodo.10888581
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spelling ftzenodo:oai:zenodo.org:10888581 2024-09-15T18:28:49+00:00 Dataset of origins of replication in circular prokaryotic chromosomes van Meel, Zoya 2024-03-27 https://doi.org/10.5281/zenodo.10888581 unknown Zenodo https://doi.org/10.5281/zenodo.10888580 https://doi.org/10.5281/zenodo.10888581 oai:zenodo.org:10888581 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode info:eu-repo/semantics/other 2024 ftzenodo https://doi.org/10.5281/zenodo.1088858110.5281/zenodo.10888580 2024-07-25T09:50:55Z This dataset includes two files downloaded from the DoriC 12.0 database [1] and one file with experimentally verified origins of replications (oriCs). The two DoriC files describe oriCs of circular chromosomes predicted with Ori-Finder on complete and chromosome level assemblies. The experimental_dataset file is a describes a set of experimentally verified oriCs, including accession numbers and and sources, collected via literature review. The oriC_number column is used in the case of bipartite origins. These files were used in the development of ORCA: https://github.com/ZoyavanMeel/ORCA . [1] Mei-Jing Dong, Hao Luo and Feng Gao, DoriC 12.0: an updated database of replication origins in both complete and draft prokaryotic genomes, Nucleic Acid Research, 2023, doi:10.1093/nar/gkac964 . Other/Unknown Material Orca Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
description This dataset includes two files downloaded from the DoriC 12.0 database [1] and one file with experimentally verified origins of replications (oriCs). The two DoriC files describe oriCs of circular chromosomes predicted with Ori-Finder on complete and chromosome level assemblies. The experimental_dataset file is a describes a set of experimentally verified oriCs, including accession numbers and and sources, collected via literature review. The oriC_number column is used in the case of bipartite origins. These files were used in the development of ORCA: https://github.com/ZoyavanMeel/ORCA . [1] Mei-Jing Dong, Hao Luo and Feng Gao, DoriC 12.0: an updated database of replication origins in both complete and draft prokaryotic genomes, Nucleic Acid Research, 2023, doi:10.1093/nar/gkac964 .
format Other/Unknown Material
author van Meel, Zoya
spellingShingle van Meel, Zoya
Dataset of origins of replication in circular prokaryotic chromosomes
author_facet van Meel, Zoya
author_sort van Meel, Zoya
title Dataset of origins of replication in circular prokaryotic chromosomes
title_short Dataset of origins of replication in circular prokaryotic chromosomes
title_full Dataset of origins of replication in circular prokaryotic chromosomes
title_fullStr Dataset of origins of replication in circular prokaryotic chromosomes
title_full_unstemmed Dataset of origins of replication in circular prokaryotic chromosomes
title_sort dataset of origins of replication in circular prokaryotic chromosomes
publisher Zenodo
publishDate 2024
url https://doi.org/10.5281/zenodo.10888581
genre Orca
genre_facet Orca
op_relation https://doi.org/10.5281/zenodo.10888580
https://doi.org/10.5281/zenodo.10888581
oai:zenodo.org:10888581
op_rights info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
op_doi https://doi.org/10.5281/zenodo.1088858110.5281/zenodo.10888580
_version_ 1810470248434892800

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