Supplementary Material: Adaptation strategies of iron-oxidizing bacteria Gallionella and Zetaproteobacteria crossing the marine–freshwater barrier

• Main Authors: Hribovšek, Petra, Olesin Denny, Emily, Mall, Achim, Dahle, Håkon, Steen, Ida Helene, Stokke, Runar
• Format: Other/Unknown Material
• Language: unknown
• Published: Zenodo 2024
• Subjects: Gallionella; Mariprofundus; Zetaproteobacteria; iron oxidation; hydrothermal vents; marine; freshwater; Jan Mayen
• Online Access: https://doi.org/10.5281/zenodo.10655784

This repository contains supplementary material related to the manuscript " Adaptation strategies of iron-oxidizing bacteria Gallionella and Zetaproteobacteria crossing the marine–freshwater barrier ". 1) SupplementaryMaterial1_SupplementaryTables.xlsx Supplementary Material 1. Supplementary Tables. Supplementary Table S1. Sampling locations at Fåvne and Troll Wall vent fields. Supplementary Table S2. Gallionella MAGs used in this study. Supplementary Table S3. Zetaproteobacteria MAGs used in this study. Supplementary Table S4. Coverage and relative abundances of FeOB Gallionellaceae and Zetaproteobacteria MAGs from this study. Supplementary Table S5. Gallionellaceae MAGs recovered in this study. Supplementary Table S6. List of single-copy marker genes used for concatenated phylogeny of Gallionella . Supplementary Table S7. Functional enrichment of genes in Gallionella MAGs based on the environment. Supplementary Table S8. Functional enrichment of genes in Zetaproteobacteria MAGs based on the environment. Supplementary Table S9. Functional enrichment of genes in Mariprofundus MAGs based on the environment. Supplementary Table S10. Average MAG statistics of Gallionella and Zetaproteobacteria genomes. Supplementary Table S11. Isoelectric point (pI) relative frequencies of the predicted proteomes. 2) FigS1.pdf Fig S1. Phylogeny of typically freshwater Betaproteobacteria genus Gallionella. The phylogenomics tree is based on a concatenated alignment of a manually curated set of 15 single copy gene markers (Table SX) using MAGs from this study and references. Sfz1-4/Sfb1-4: potential stalk formation genes in Zetaproteobacteria/Betaproteobacteria. Environment specified is based on NCBI metadata. Blue genomes have been reconstructed from the Fåvne vent field and Jan Mayen vent field. The maximum likelihood tree with substitution model GTR20+F+R6. Black node circles mark branches with support values higher than 80% with SH-like approximate likelihood ratio test and 95% with ultrafast bootstrapping, both including 1000 ...