Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia
Staphylinidae, or rove beetles, are one of the mega-diverse and abundant families of the ground-living terrestrial arthropods that is taxonomically poorly known even in the regions adjacent to Europe where the fauna has been investigated for the longest time. Since DNA barcoding is a tool to acceler...
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Pensoft Publishers
2023
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Online Access: | https://doi.org/10.3897/BDJ.11.e115477 |
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institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
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language |
unknown |
topic |
Biota Animalia Arthropoda Insecta Coleoptera Staphylinoidea Staphylinidae biodiversity BOLD COI ecology GenBank insects taxonomy |
spellingShingle |
Biota Animalia Arthropoda Insecta Coleoptera Staphylinoidea Staphylinidae biodiversity BOLD COI ecology GenBank insects taxonomy Krivosheeva, Valeria Solodovnikov, Alexey Shulepov, Aleksandr Semerikova, Darya Ivanova, Anastasiya Salnitska, Maria Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia |
topic_facet |
Biota Animalia Arthropoda Insecta Coleoptera Staphylinoidea Staphylinidae biodiversity BOLD COI ecology GenBank insects taxonomy |
description |
Staphylinidae, or rove beetles, are one of the mega-diverse and abundant families of the ground-living terrestrial arthropods that is taxonomically poorly known even in the regions adjacent to Europe where the fauna has been investigated for the longest time. Since DNA barcoding is a tool to accelerate biodiversity research, here we explored if the currently-available COI barcode libraries are representative enough for the study of rove beetles of West Siberia. This is a vast region adjacent to Europe with poorly-known fauna of rove beetles and from where not a single DNA barcode has hitherto been produced for Staphylinidae. First, we investigated the faunal similarity between the rove beetle faunas of the climatically compatible West Siberia in Asia, Fennoscandia in Europe and Canada and Alaska in North America. Second, we investigated barcodes available for Staphylinidae from the latter two regions in BOLD and GenBank, the world's largest DNA barcode libraries. We conclude that the rather different rove beetle faunas of Fennoscandia, on the one hand and Canada and Alaska on the other hand, are well covered in both barcode libraries that complement each other. We also find that even without any barcodes originating from specimens collected in West Siberia, this coverage is helpful for the study of rove beetles there due to the significant number of widespread species shared between West Siberia and Fennoscandia and due to the even larger number of shared genera amongst all three investigated regions. For the first time, we compiled a literature-based checklist for 726 species of the West Siberian Staphylinidae supplemented by their occurrence dataset submitted to GBIF. Our script written for mining unique (i.e. not redundant) barcodes for a given geographic area across global libraries is made available here and can be adopted for any other regions. |
format |
Article in Journal/Newspaper |
author |
Krivosheeva, Valeria Solodovnikov, Alexey Shulepov, Aleksandr Semerikova, Darya Ivanova, Anastasiya Salnitska, Maria |
author_facet |
Krivosheeva, Valeria Solodovnikov, Alexey Shulepov, Aleksandr Semerikova, Darya Ivanova, Anastasiya Salnitska, Maria |
author_sort |
Krivosheeva, Valeria |
title |
Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia |
title_short |
Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia |
title_full |
Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia |
title_fullStr |
Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia |
title_full_unstemmed |
Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia |
title_sort |
assessment of the dna barcode libraries for the study of the poorly-known rove beetle (staphylinidae) fauna of west siberia |
publisher |
Pensoft Publishers |
publishDate |
2023 |
url |
https://doi.org/10.3897/BDJ.11.e115477 |
genre |
Fennoscandia Alaska Siberia |
genre_facet |
Fennoscandia Alaska Siberia |
op_source |
Biodiversity Data Journal, 11, e115477, (2023-12-20) |
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ftzenodo:oai:zenodo.org:10424620 2024-09-15T18:05:52+00:00 Assessment of the DNA barcode libraries for the study of the poorly-known rove beetle (Staphylinidae) fauna of West Siberia Krivosheeva, Valeria Solodovnikov, Alexey Shulepov, Aleksandr Semerikova, Darya Ivanova, Anastasiya Salnitska, Maria 2023-12-20 https://doi.org/10.3897/BDJ.11.e115477 unknown Pensoft Publishers https://doi.org/10.3897/BDJ.11.e115477.figure2 https://doi.org/10.3897/BDJ.11.e115477.figure1 https://doi.org/10.3897/BDJ.11.e115477.suppl2 https://doi.org/10.3897/BDJ.11.e115477.suppl3 https://doi.org/10.3897/BDJ.11.e115477.suppl1 https://doi.org/10.1034/j.1600-0587.2001.240307.x https://doi.org/10.2307/1786310 https://doi.org/10.1007/978-3-319-70257-5 https://doi.org/10.1098/rspb.1995.0186 https://doi.org/10.3897/zookeys.360.4742 https://doi.org/10.1098/rsos.211771 https://doi.org/10.3389/fevo.2023.1149839 https://doi.org/10.48550/arXiv.2110.09619 https://doi.org/10.1038/s41597-019-0320-2 https://doi.org/10.11646/zootaxa.5027.3.3 https://doi.org/10.1002/ece3.6733 https://doi.org/10.15468/dl.6fbehf https://doi.org/10.15468/dl.tjskmp https://doi.org/10.1134/s0001433818060075 https://doi.org/10.3390/d13070313 https://doi.org/10.1371/journal.pone.0125635 https://doi.org/10.14411/eje.2018.025 https://doi.org/10.1111/1755-0998.12638 https://doi.org/10.1098/rstb.2015.0333 https://doi.org/10.1111/1755-0998.12354 https://doi.org/10.1206/0003-0090.265.1.1 https://doi.org/10.5169/seals-266450 https://doi.org/10.3402/polar.v32i0.18793 https://doi.org/10.3390/insects13010094 https://doi.org/10.1139/f06-020 https://doi.org/10.3389/fmars.2019.00674 https://doi.org/10.1111/cla.12489 https://doi.org/10.3897/biss.3.37224 https://doi.org/10.1371/journal.pone.0108651 https://doi.org/10.3897/zookeys.894.37862 https://doi.org/10.1080/24750263.2020.1773948 https://doi.org/10.1111/j.1471-8286.2007.01678.x https://doi.org/10.1111/2041-210x.12824 https://doi.org/10.3897/zookeys.847.34049 https://doi.org/10.1093/nar/gkab1135 https://doi.org/10.1146/annurev-ento-112408-085432 https://doi.org/10.1111/1755-0998.12363 https://doi.org/10.1093/aesa/87.6.651 https://doi.org/10.1111/j.1365-294x.2012.05470.x https://doi.org/10.3390/biology10040323 https://doi.org/10.1111/j.2041-210x.2012.00198.x https://doi.org/10.1111/syen.12382 https://zenodo.org/communities/biosyslit https://doi.org/10.3897/BDJ.11.e115477 oai:zenodo.org:10424620 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode Biodiversity Data Journal, 11, e115477, (2023-12-20) Biota Animalia Arthropoda Insecta Coleoptera Staphylinoidea Staphylinidae biodiversity BOLD COI ecology GenBank insects taxonomy info:eu-repo/semantics/article 2023 ftzenodo https://doi.org/10.3897/BDJ.11.e11547710.3897/BDJ.11.e115477.figure210.3897/BDJ.11.e115477.figure110.3897/BDJ.11.e115477.suppl210.3897/BDJ.11.e115477.suppl310.3897/BDJ.11.e115477.suppl110.1034/j.1600-0587.2001.240307.x10.2307/178631010.1007/978-3-319-7025 2024-07-27T00:29:03Z Staphylinidae, or rove beetles, are one of the mega-diverse and abundant families of the ground-living terrestrial arthropods that is taxonomically poorly known even in the regions adjacent to Europe where the fauna has been investigated for the longest time. Since DNA barcoding is a tool to accelerate biodiversity research, here we explored if the currently-available COI barcode libraries are representative enough for the study of rove beetles of West Siberia. This is a vast region adjacent to Europe with poorly-known fauna of rove beetles and from where not a single DNA barcode has hitherto been produced for Staphylinidae. First, we investigated the faunal similarity between the rove beetle faunas of the climatically compatible West Siberia in Asia, Fennoscandia in Europe and Canada and Alaska in North America. Second, we investigated barcodes available for Staphylinidae from the latter two regions in BOLD and GenBank, the world's largest DNA barcode libraries. We conclude that the rather different rove beetle faunas of Fennoscandia, on the one hand and Canada and Alaska on the other hand, are well covered in both barcode libraries that complement each other. We also find that even without any barcodes originating from specimens collected in West Siberia, this coverage is helpful for the study of rove beetles there due to the significant number of widespread species shared between West Siberia and Fennoscandia and due to the even larger number of shared genera amongst all three investigated regions. For the first time, we compiled a literature-based checklist for 726 species of the West Siberian Staphylinidae supplemented by their occurrence dataset submitted to GBIF. Our script written for mining unique (i.e. not redundant) barcodes for a given geographic area across global libraries is made available here and can be adopted for any other regions. Article in Journal/Newspaper Fennoscandia Alaska Siberia Zenodo |