Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms
Author Posting. © Inter-Research, 2013. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 492 (2013): 1-8, doi:10.3354/meps10526. Increasing atmospheric CO2 concentrations are c...
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ftwhoas:oai:darchive.mblwhoilibrary.org:1912/6333 2023-05-15T17:51:49+02:00 Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms Bowen, Jennifer L. Kearns, Patrick J. Holcomb, Michael Ward, Bess B. 2013-10-31 application/pdf https://hdl.handle.net/1912/6333 en eng Inter-Research https://doi.org/10.3354/meps10526 Marine Ecology Progress Series 492 (2013): 1-8 https://hdl.handle.net/1912/6333 doi:10.3354/meps10526 Marine Ecology Progress Series 492 (2013): 1-8 doi:10.3354/meps10526 Ocean acidification Ammonia-oxidizing archaea Ammonia-oxidizing bacteria Nitrification Article 2013 ftwhoas https://doi.org/10.3354/meps10526 2022-05-28T22:58:58Z Author Posting. © Inter-Research, 2013. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 492 (2013): 1-8, doi:10.3354/meps10526. Increasing atmospheric CO2 concentrations are causing decreased pH over vast expanses of the ocean. This decreasing pH may alter biogeochemical cycling of carbon and nitrogen via the microbial process of nitrification, a key process that couples these cycles in the ocean, but which is often sensitive to acidic conditions. Recent reports have indicated a decrease in oceanic nitrification rates under experimentally lowered pH. How the composition and abundance of ammonia-oxidizing bacteria (AOB) and archaea (AOA) assemblages respond to decreasing oceanic pH is unknown. We sampled microbes from 2 different acidification experiments and used a combination of qPCR and functional gene microarrays for the ammonia monooxygenase gene (amoA) to assess how acidification alters the structure of ammonia oxidizer assemblages. We show that despite widely different experimental conditions, acidification consistently altered the community composition of AOB by increasing the relative abundance of taxa related to the Nitrosomonas ureae clade. In one experiment, this increase was sufficient to cause an increase in the overall abundance of AOB. There were no systematic shifts in the community structure or abundance of AOA in either experiment. These different responses to acidification underscore the important role of microbial community structure in the resiliency of marine ecosystems. NSF funding to B.B.W. supported the barrel experiments. Funding for the coral experiments came from NSF (GRF to M.H.; OCE-1041106), the Woods Hole Oceanographic Institution’s Ocean Life Institute, and the International Society for Reef Studies. Article in Journal/Newspaper Ocean acidification Woods Hole Scientific Community: WHOAS (Woods Hole Open Access Server) Marine Ecology Progress Series 492 1 8 |
institution |
Open Polar |
collection |
Woods Hole Scientific Community: WHOAS (Woods Hole Open Access Server) |
op_collection_id |
ftwhoas |
language |
English |
topic |
Ocean acidification Ammonia-oxidizing archaea Ammonia-oxidizing bacteria Nitrification |
spellingShingle |
Ocean acidification Ammonia-oxidizing archaea Ammonia-oxidizing bacteria Nitrification Bowen, Jennifer L. Kearns, Patrick J. Holcomb, Michael Ward, Bess B. Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
topic_facet |
Ocean acidification Ammonia-oxidizing archaea Ammonia-oxidizing bacteria Nitrification |
description |
Author Posting. © Inter-Research, 2013. This article is posted here by permission of Inter-Research for personal use, not for redistribution. The definitive version was published in Marine Ecology Progress Series 492 (2013): 1-8, doi:10.3354/meps10526. Increasing atmospheric CO2 concentrations are causing decreased pH over vast expanses of the ocean. This decreasing pH may alter biogeochemical cycling of carbon and nitrogen via the microbial process of nitrification, a key process that couples these cycles in the ocean, but which is often sensitive to acidic conditions. Recent reports have indicated a decrease in oceanic nitrification rates under experimentally lowered pH. How the composition and abundance of ammonia-oxidizing bacteria (AOB) and archaea (AOA) assemblages respond to decreasing oceanic pH is unknown. We sampled microbes from 2 different acidification experiments and used a combination of qPCR and functional gene microarrays for the ammonia monooxygenase gene (amoA) to assess how acidification alters the structure of ammonia oxidizer assemblages. We show that despite widely different experimental conditions, acidification consistently altered the community composition of AOB by increasing the relative abundance of taxa related to the Nitrosomonas ureae clade. In one experiment, this increase was sufficient to cause an increase in the overall abundance of AOB. There were no systematic shifts in the community structure or abundance of AOA in either experiment. These different responses to acidification underscore the important role of microbial community structure in the resiliency of marine ecosystems. NSF funding to B.B.W. supported the barrel experiments. Funding for the coral experiments came from NSF (GRF to M.H.; OCE-1041106), the Woods Hole Oceanographic Institution’s Ocean Life Institute, and the International Society for Reef Studies. |
format |
Article in Journal/Newspaper |
author |
Bowen, Jennifer L. Kearns, Patrick J. Holcomb, Michael Ward, Bess B. |
author_facet |
Bowen, Jennifer L. Kearns, Patrick J. Holcomb, Michael Ward, Bess B. |
author_sort |
Bowen, Jennifer L. |
title |
Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
title_short |
Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
title_full |
Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
title_fullStr |
Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
title_full_unstemmed |
Acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
title_sort |
acidification alters the composition of ammonia‑oxidizing microbial assemblages in marine mesocosms |
publisher |
Inter-Research |
publishDate |
2013 |
url |
https://hdl.handle.net/1912/6333 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_source |
Marine Ecology Progress Series 492 (2013): 1-8 doi:10.3354/meps10526 |
op_relation |
https://doi.org/10.3354/meps10526 Marine Ecology Progress Series 492 (2013): 1-8 https://hdl.handle.net/1912/6333 doi:10.3354/meps10526 |
op_doi |
https://doi.org/10.3354/meps10526 |
container_title |
Marine Ecology Progress Series |
container_volume |
492 |
container_start_page |
1 |
op_container_end_page |
8 |
_version_ |
1766159073001078784 |