A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.)
BioMed Central Background: Atlantic salmon (Salmo salar L.) is an environmentally and economically important organism and its gene content is reasonably well characterized. From a transcriptional standpoint, it is important to characterize the changes in gene expression over the course of unperturbe...
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ftuvicpubl:oai:dspace.library.uvic.ca:1828/4984 2023-05-15T15:30:37+02:00 A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) Jantzen, Stuart G. Sanderson, Dan S. Von Schalburg, Kristian Robert Yasuike, Motoshige Marass, Francesco Koop, Benjamin F. 2011 application/pdf http://hdl.handle.net/1828/4984 http://www.biomedcentral.com/1756-0500/4/88 https://doi.org/10.1186/1756-0500-4-88 en eng BioMed Central Jantzen et al.: A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.). BMC Research Notes 2011 4:88. http://www.biomedcentral.com/1756-0500/4/88 http://dx.doi.org/10.1186/1756-0500-4-88 http://hdl.handle.net/1828/4984 Article 2011 ftuvicpubl https://doi.org/10.1186/1756-0500-4-88 2022-05-19T06:11:05Z BioMed Central Background: Atlantic salmon (Salmo salar L.) is an environmentally and economically important organism and its gene content is reasonably well characterized. From a transcriptional standpoint, it is important to characterize the changes in gene expression over the course of unperturbed early development, from fertilization through to the parr stage. Findings: S. salar samples were taken at 17 time points from 2 to 89 days post fertilization. Total RNA was extracted and cRNA was synthesized and hybridized to a newly developed 44K oligo salmonid microarray platform. Quantified results were subjected to preliminary data analysis and submitted to NCBI’s Gene Expression Omnibus (GEO). Data can be found under the GEO accession number GSE25938. http://www.ncbi.nlm.nih.gov/geo/query/acc. cgi?acc=GSE25938 Conclusions: Throughout the entire period of development, several thousand genes were found to be differentially regulated. This work represents the trancriptional characterization of a very large geneset that will be extremely valuable in further examination of the transcriptional changes in Atlantic salmon during the first few months of development. The expression profiles can help to annotate salmon genes in addition to being used as references against any number of experimental variables to which developing salmonids might be subjected. Faculty Reviewed Article in Journal/Newspaper Atlantic salmon Salmo salar University of Victoria (Canada): UVicDSpace BMC Research Notes 4 1 |
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University of Victoria (Canada): UVicDSpace |
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ftuvicpubl |
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English |
description |
BioMed Central Background: Atlantic salmon (Salmo salar L.) is an environmentally and economically important organism and its gene content is reasonably well characterized. From a transcriptional standpoint, it is important to characterize the changes in gene expression over the course of unperturbed early development, from fertilization through to the parr stage. Findings: S. salar samples were taken at 17 time points from 2 to 89 days post fertilization. Total RNA was extracted and cRNA was synthesized and hybridized to a newly developed 44K oligo salmonid microarray platform. Quantified results were subjected to preliminary data analysis and submitted to NCBI’s Gene Expression Omnibus (GEO). Data can be found under the GEO accession number GSE25938. http://www.ncbi.nlm.nih.gov/geo/query/acc. cgi?acc=GSE25938 Conclusions: Throughout the entire period of development, several thousand genes were found to be differentially regulated. This work represents the trancriptional characterization of a very large geneset that will be extremely valuable in further examination of the transcriptional changes in Atlantic salmon during the first few months of development. The expression profiles can help to annotate salmon genes in addition to being used as references against any number of experimental variables to which developing salmonids might be subjected. Faculty Reviewed |
format |
Article in Journal/Newspaper |
author |
Jantzen, Stuart G. Sanderson, Dan S. Von Schalburg, Kristian Robert Yasuike, Motoshige Marass, Francesco Koop, Benjamin F. |
spellingShingle |
Jantzen, Stuart G. Sanderson, Dan S. Von Schalburg, Kristian Robert Yasuike, Motoshige Marass, Francesco Koop, Benjamin F. A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) |
author_facet |
Jantzen, Stuart G. Sanderson, Dan S. Von Schalburg, Kristian Robert Yasuike, Motoshige Marass, Francesco Koop, Benjamin F. |
author_sort |
Jantzen, Stuart G. |
title |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) |
title_short |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) |
title_full |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) |
title_fullStr |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) |
title_full_unstemmed |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.) |
title_sort |
44k microarray dataset of the changing transcriptome in developing atlantic salmon (salmo salar l.) |
publisher |
BioMed Central |
publishDate |
2011 |
url |
http://hdl.handle.net/1828/4984 http://www.biomedcentral.com/1756-0500/4/88 https://doi.org/10.1186/1756-0500-4-88 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
Jantzen et al.: A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon (Salmo salar L.). BMC Research Notes 2011 4:88. http://www.biomedcentral.com/1756-0500/4/88 http://dx.doi.org/10.1186/1756-0500-4-88 http://hdl.handle.net/1828/4984 |
op_doi |
https://doi.org/10.1186/1756-0500-4-88 |
container_title |
BMC Research Notes |
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4 |
container_issue |
1 |
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1766361066475880448 |