Siberian sturgeon multi-tissue reference transcriptome database
International audience Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequenci...
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2020
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Online Access: | https://hal.inrae.fr/hal-03157672 https://hal.inrae.fr/hal-03157672/document https://hal.inrae.fr/hal-03157672/file/2020_Klopp_Database.pdf https://doi.org/10.1093/database/baaa082 |
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ftutoulouse3hal:oai:HAL:hal-03157672v1 2023-07-30T04:06:48+02:00 Siberian sturgeon multi-tissue reference transcriptome database Klopp, Christophe, Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise Système d'Information des GENomes des Animaux d'Elevage (SIGENAE) Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE) Génétique Physiologie et Systèmes d'Elevage (GenPhySE ) Ecole Nationale Vétérinaire de Toulouse (ENVT) Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Molecular Biology / Biología Molecular Montevideo Institut Pasteur de Montevideo Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP) Universidad de la República Montevideo (UDELAR) Comision Sectorial de Investigacion Cientifica (CSIC), Universidad de la Republica Oriental del Uruguay (C225-348) Agencia Nacional de Investigacion e Innovacion-Direccion Nacional de Recursos Acuaticos ANIIDINARA (FPA 9 975) Agencia Nacional de Investigacion e Innovacion (FMV_1_2017_1_135 908) 2020-11-25 https://hal.inrae.fr/hal-03157672 https://hal.inrae.fr/hal-03157672/document https://hal.inrae.fr/hal-03157672/file/2020_Klopp_Database.pdf https://doi.org/10.1093/database/baaa082 en eng HAL CCSD Oxford University Press info:eu-repo/semantics/altIdentifier/doi/10.1093/database/baaa082 info:eu-repo/semantics/altIdentifier/pmid/33238003 hal-03157672 https://hal.inrae.fr/hal-03157672 https://hal.inrae.fr/hal-03157672/document https://hal.inrae.fr/hal-03157672/file/2020_Klopp_Database.pdf doi:10.1093/database/baaa082 PUBMED: 33238003 WOS: 000597226500001 http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess ISSN: 1758-0463 EISSN: 1758-0463 Database - The journal of Biological Databases and Curation https://hal.inrae.fr/hal-03157672 Database - The journal of Biological Databases and Curation, 2020, 2020, pp.1-8. ⟨10.1093/database/baaa082⟩ Siberian sturgeon Transcriptome [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] info:eu-repo/semantics/article Journal articles 2020 ftutoulouse3hal https://doi.org/10.1093/database/baaa082 2023-07-20T21:56:55Z International audience Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. Results: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. Article in Journal/Newspaper Siberian sturgeon Université Toulouse III - Paul Sabatier: HAL-UPS Database 2020 |
institution |
Open Polar |
collection |
Université Toulouse III - Paul Sabatier: HAL-UPS |
op_collection_id |
ftutoulouse3hal |
language |
English |
topic |
Siberian sturgeon Transcriptome [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] |
spellingShingle |
Siberian sturgeon Transcriptome [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] Klopp, Christophe, Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise Siberian sturgeon multi-tissue reference transcriptome database |
topic_facet |
Siberian sturgeon Transcriptome [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] |
description |
International audience Motivation: Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies. Results: We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets. |
author2 |
Système d'Information des GENomes des Animaux d'Elevage (SIGENAE) Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE) Génétique Physiologie et Systèmes d'Elevage (GenPhySE ) Ecole Nationale Vétérinaire de Toulouse (ENVT) Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Molecular Biology / Biología Molecular Montevideo Institut Pasteur de Montevideo Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP) Universidad de la República Montevideo (UDELAR) Comision Sectorial de Investigacion Cientifica (CSIC), Universidad de la Republica Oriental del Uruguay (C225-348) Agencia Nacional de Investigacion e Innovacion-Direccion Nacional de Recursos Acuaticos ANIIDINARA (FPA 9 975) Agencia Nacional de Investigacion e Innovacion (FMV_1_2017_1_135 908) |
format |
Article in Journal/Newspaper |
author |
Klopp, Christophe, Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise |
author_facet |
Klopp, Christophe, Cabau, Cédric Greif, Gonzalo Lasalle, André Di Landro, Santiago Vizziano-Cantonnet, Denise |
author_sort |
Klopp, Christophe, |
title |
Siberian sturgeon multi-tissue reference transcriptome database |
title_short |
Siberian sturgeon multi-tissue reference transcriptome database |
title_full |
Siberian sturgeon multi-tissue reference transcriptome database |
title_fullStr |
Siberian sturgeon multi-tissue reference transcriptome database |
title_full_unstemmed |
Siberian sturgeon multi-tissue reference transcriptome database |
title_sort |
siberian sturgeon multi-tissue reference transcriptome database |
publisher |
HAL CCSD |
publishDate |
2020 |
url |
https://hal.inrae.fr/hal-03157672 https://hal.inrae.fr/hal-03157672/document https://hal.inrae.fr/hal-03157672/file/2020_Klopp_Database.pdf https://doi.org/10.1093/database/baaa082 |
genre |
Siberian sturgeon |
genre_facet |
Siberian sturgeon |
op_source |
ISSN: 1758-0463 EISSN: 1758-0463 Database - The journal of Biological Databases and Curation https://hal.inrae.fr/hal-03157672 Database - The journal of Biological Databases and Curation, 2020, 2020, pp.1-8. ⟨10.1093/database/baaa082⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1093/database/baaa082 info:eu-repo/semantics/altIdentifier/pmid/33238003 hal-03157672 https://hal.inrae.fr/hal-03157672 https://hal.inrae.fr/hal-03157672/document https://hal.inrae.fr/hal-03157672/file/2020_Klopp_Database.pdf doi:10.1093/database/baaa082 PUBMED: 33238003 WOS: 000597226500001 |
op_rights |
http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.1093/database/baaa082 |
container_title |
Database |
container_volume |
2020 |
_version_ |
1772819727189540864 |