Multi-tissue Siberian sturgeon RNA sequencing data
International audience Siberian sturgeon, Acipenser baerii, is a commercially valuable fish for flesh and caviar production and a threatened species. We produced transcriptomic data for ten tissues with relevance to puberty, reproduction, early development, growth and food intake. The data includes...
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ftutoulouse3hal:oai:HAL:hal-03157670v1 2024-05-19T07:27:22+00:00 Multi-tissue Siberian sturgeon RNA sequencing data Klopp, Christophe, C. Cabau, Cédric Lasalle, André Di Landro, Santiago Greif, Gonzalo Vizziano-Cantonnet, Denise Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE) Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Système d'Information des GENomes des Animaux d'Elevage (SIGENAE) Génétique Physiologie et Systèmes d'Elevage (GenPhySE ) Ecole Nationale Vétérinaire de Toulouse (ENVT) Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Univ Republ Oriental Uruguay, Inst Biol, Fac Ciencias, Lab Fisiol Reprod & Ecol Peces Institut Pasteur de Montevideo Réseau International des Instituts Pasteur (RIIP) Comision Sectorial de Investigacion Cientifica (CSIC), Universidad de la Republica Oriental del Uruguay-Uruguay - C225-348 Agencia Nacional de Investigacion e Innovacion-Direccion Nacional de Recursos Acuaticos ANII-DINARA-Uruguay - FPA 9975 Agencia Nacional de Investigacion e Innovacion - FMV_1_2017_1_135908 2020-08 https://hal.inrae.fr/hal-03157670 https://doi.org/10.1016/j.dib.2020.105820 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/j.dib.2020.105820 info:eu-repo/semantics/altIdentifier/pmid/32596425 hal-03157670 https://hal.inrae.fr/hal-03157670 doi:10.1016/j.dib.2020.105820 PUBMED: 32596425 PUBMEDCENTRAL: PMC7306608 WOS: 000569217700048 http://creativecommons.org/licenses/by/ ISSN: 2352-3409 Data in Brief https://hal.inrae.fr/hal-03157670 Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105820⟩ Siberian sturgeon Transcriptomics Anterior-kidney Kidney Stomach Liver Embryos [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] info:eu-repo/semantics/article Journal articles 2020 ftutoulouse3hal https://doi.org/10.1016/j.dib.2020.105820 2024-04-25T01:06:30Z International audience Siberian sturgeon, Acipenser baerii, is a commercially valuable fish for flesh and caviar production and a threatened species. We produced transcriptomic data for ten tissues with relevance to puberty, reproduction, early development, growth and food intake. The data includes RNA-Seq read sets of brain, pituitary, anterior-kidney, kidney, stomach, liver, heart, embryonic, pre-larval, and immature gonad sequences. Tissues were collected from sex differentiated fish (17 to 42 months of age, 66 to 85 cm) RNA was extracted and sequenced. Our purpose is to facilitate fundamental studies of sturgeon physiology to wild and aquaculture populations management. (C) 2020 The Author(s). Published by Elsevier Inc. Article in Journal/Newspaper Acipenser baerii Siberian sturgeon Université Toulouse III - Paul Sabatier: HAL-UPS Data in Brief 31 105820 |
institution |
Open Polar |
collection |
Université Toulouse III - Paul Sabatier: HAL-UPS |
op_collection_id |
ftutoulouse3hal |
language |
English |
topic |
Siberian sturgeon Transcriptomics Anterior-kidney Kidney Stomach Liver Embryos [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] |
spellingShingle |
Siberian sturgeon Transcriptomics Anterior-kidney Kidney Stomach Liver Embryos [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] Klopp, Christophe, C. Cabau, Cédric Lasalle, André Di Landro, Santiago Greif, Gonzalo Vizziano-Cantonnet, Denise Multi-tissue Siberian sturgeon RNA sequencing data |
topic_facet |
Siberian sturgeon Transcriptomics Anterior-kidney Kidney Stomach Liver Embryos [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN] [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM] |
description |
International audience Siberian sturgeon, Acipenser baerii, is a commercially valuable fish for flesh and caviar production and a threatened species. We produced transcriptomic data for ten tissues with relevance to puberty, reproduction, early development, growth and food intake. The data includes RNA-Seq read sets of brain, pituitary, anterior-kidney, kidney, stomach, liver, heart, embryonic, pre-larval, and immature gonad sequences. Tissues were collected from sex differentiated fish (17 to 42 months of age, 66 to 85 cm) RNA was extracted and sequenced. Our purpose is to facilitate fundamental studies of sturgeon physiology to wild and aquaculture populations management. (C) 2020 The Author(s). Published by Elsevier Inc. |
author2 |
Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE) Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Système d'Information des GENomes des Animaux d'Elevage (SIGENAE) Génétique Physiologie et Systèmes d'Elevage (GenPhySE ) Ecole Nationale Vétérinaire de Toulouse (ENVT) Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP) Université de Toulouse (UT)-Université de Toulouse (UT)-École nationale supérieure agronomique de Toulouse (ENSAT) Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Univ Republ Oriental Uruguay, Inst Biol, Fac Ciencias, Lab Fisiol Reprod & Ecol Peces Institut Pasteur de Montevideo Réseau International des Instituts Pasteur (RIIP) Comision Sectorial de Investigacion Cientifica (CSIC), Universidad de la Republica Oriental del Uruguay-Uruguay - C225-348 Agencia Nacional de Investigacion e Innovacion-Direccion Nacional de Recursos Acuaticos ANII-DINARA-Uruguay - FPA 9975 Agencia Nacional de Investigacion e Innovacion - FMV_1_2017_1_135908 |
format |
Article in Journal/Newspaper |
author |
Klopp, Christophe, C. Cabau, Cédric Lasalle, André Di Landro, Santiago Greif, Gonzalo Vizziano-Cantonnet, Denise |
author_facet |
Klopp, Christophe, C. Cabau, Cédric Lasalle, André Di Landro, Santiago Greif, Gonzalo Vizziano-Cantonnet, Denise |
author_sort |
Klopp, Christophe, C. |
title |
Multi-tissue Siberian sturgeon RNA sequencing data |
title_short |
Multi-tissue Siberian sturgeon RNA sequencing data |
title_full |
Multi-tissue Siberian sturgeon RNA sequencing data |
title_fullStr |
Multi-tissue Siberian sturgeon RNA sequencing data |
title_full_unstemmed |
Multi-tissue Siberian sturgeon RNA sequencing data |
title_sort |
multi-tissue siberian sturgeon rna sequencing data |
publisher |
HAL CCSD |
publishDate |
2020 |
url |
https://hal.inrae.fr/hal-03157670 https://doi.org/10.1016/j.dib.2020.105820 |
genre |
Acipenser baerii Siberian sturgeon |
genre_facet |
Acipenser baerii Siberian sturgeon |
op_source |
ISSN: 2352-3409 Data in Brief https://hal.inrae.fr/hal-03157670 Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105820⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.dib.2020.105820 info:eu-repo/semantics/altIdentifier/pmid/32596425 hal-03157670 https://hal.inrae.fr/hal-03157670 doi:10.1016/j.dib.2020.105820 PUBMED: 32596425 PUBMEDCENTRAL: PMC7306608 WOS: 000569217700048 |
op_rights |
http://creativecommons.org/licenses/by/ |
op_doi |
https://doi.org/10.1016/j.dib.2020.105820 |
container_title |
Data in Brief |
container_volume |
31 |
container_start_page |
105820 |
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1799472039309869056 |