SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems

SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem...

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Published in:Geoscientific Model Development
Main Authors: Bradley, J. A., Anesio, A. M., Singarayer, J. S., Heath, M. R., Arndt, S.
Format: Article in Journal/Newspaper
Language:English
Published: 2015
Subjects:
Online Access:https://strathprints.strath.ac.uk/54806/
https://strathprints.strath.ac.uk/54806/1/Bradley_etal_GMD_2015_SHIMMER_1_0_a_novel_mathematical_model_for_microbial_and_biogeochemical_dynamics.pdf
https://doi.org/10.5194/gmd-8-3441-2015
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spelling ftustrathclyde:oai:strathprints.strath.ac.uk:54806 2024-05-12T08:04:07+00:00 SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems Bradley, J. A. Anesio, A. M. Singarayer, J. S. Heath, M. R. Arndt, S. 2015-10-28 text https://strathprints.strath.ac.uk/54806/ https://strathprints.strath.ac.uk/54806/1/Bradley_etal_GMD_2015_SHIMMER_1_0_a_novel_mathematical_model_for_microbial_and_biogeochemical_dynamics.pdf https://doi.org/10.5194/gmd-8-3441-2015 en eng https://strathprints.strath.ac.uk/54806/1/Bradley_etal_GMD_2015_SHIMMER_1_0_a_novel_mathematical_model_for_microbial_and_biogeochemical_dynamics.pdf Bradley, J. A. and Anesio, A. M. and Singarayer, J. S. and Heath, M. R. <https://strathprints.strath.ac.uk/view/author/430104.html> and Arndt, S. (2015 <https://strathprints.strath.ac.uk/view/year/2015.html>) SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems. Geoscientific Model Development <https://strathprints.strath.ac.uk/view/publications/Geoscientific_Model_Development.html>, 8 (10). pp. 3441-3470. ISSN 1991-9603 cc_by Mathematics Geography (General) Article PeerReviewed 2015 ftustrathclyde https://doi.org/10.5194/gmd-8-3441-2015 2024-04-17T14:34:50Z SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The rationale for model development arises from decades of empirical observations in glacier forefields, and enables a quantitative and process focussed approach. Here, we provide a detailed description of SHIMMER, test its performance in two case study forefields: the Damma Glacier (Switzerland) and the Athabasca Glacier (Canada) and analyse sensitivity to identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q10 values, the active fraction of microbial biomass and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Primary production is responsible for the initial build-up of labile substrate that subsequently supports heterotrophic growth. However, allochthonous contributions of organic matter, and nitrogen fixation, are important in sustaining this productivity. The development and application of SHIMMER also highlights aspects of these systems that require further empirical research: quantifying nutrient budgets and biogeochemical rates, exploring seasonality and microbial growth and cell death. This will lead to increased understanding of how glacier forefields contribute to global biogeochemical cycling and climate under future ice retreat. Article in Journal/Newspaper glacier* University of Strathclyde Glasgow: Strathprints Canada Geoscientific Model Development 8 10 3441 3470
institution Open Polar
collection University of Strathclyde Glasgow: Strathprints
op_collection_id ftustrathclyde
language English
topic Mathematics
Geography (General)
spellingShingle Mathematics
Geography (General)
Bradley, J. A.
Anesio, A. M.
Singarayer, J. S.
Heath, M. R.
Arndt, S.
SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
topic_facet Mathematics
Geography (General)
description SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The rationale for model development arises from decades of empirical observations in glacier forefields, and enables a quantitative and process focussed approach. Here, we provide a detailed description of SHIMMER, test its performance in two case study forefields: the Damma Glacier (Switzerland) and the Athabasca Glacier (Canada) and analyse sensitivity to identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q10 values, the active fraction of microbial biomass and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Primary production is responsible for the initial build-up of labile substrate that subsequently supports heterotrophic growth. However, allochthonous contributions of organic matter, and nitrogen fixation, are important in sustaining this productivity. The development and application of SHIMMER also highlights aspects of these systems that require further empirical research: quantifying nutrient budgets and biogeochemical rates, exploring seasonality and microbial growth and cell death. This will lead to increased understanding of how glacier forefields contribute to global biogeochemical cycling and climate under future ice retreat.
format Article in Journal/Newspaper
author Bradley, J. A.
Anesio, A. M.
Singarayer, J. S.
Heath, M. R.
Arndt, S.
author_facet Bradley, J. A.
Anesio, A. M.
Singarayer, J. S.
Heath, M. R.
Arndt, S.
author_sort Bradley, J. A.
title SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_short SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_full SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_fullStr SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_full_unstemmed SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_sort shimmer (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
publishDate 2015
url https://strathprints.strath.ac.uk/54806/
https://strathprints.strath.ac.uk/54806/1/Bradley_etal_GMD_2015_SHIMMER_1_0_a_novel_mathematical_model_for_microbial_and_biogeochemical_dynamics.pdf
https://doi.org/10.5194/gmd-8-3441-2015
geographic Canada
geographic_facet Canada
genre glacier*
genre_facet glacier*
op_relation https://strathprints.strath.ac.uk/54806/1/Bradley_etal_GMD_2015_SHIMMER_1_0_a_novel_mathematical_model_for_microbial_and_biogeochemical_dynamics.pdf
Bradley, J. A. and Anesio, A. M. and Singarayer, J. S. and Heath, M. R. <https://strathprints.strath.ac.uk/view/author/430104.html> and Arndt, S. (2015 <https://strathprints.strath.ac.uk/view/year/2015.html>) SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems. Geoscientific Model Development <https://strathprints.strath.ac.uk/view/publications/Geoscientific_Model_Development.html>, 8 (10). pp. 3441-3470. ISSN 1991-9603
op_rights cc_by
op_doi https://doi.org/10.5194/gmd-8-3441-2015
container_title Geoscientific Model Development
container_volume 8
container_issue 10
container_start_page 3441
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