Cold-Active Shewanella glacialimarina TZS-4(T) nov. Features a Temperature-Dependent Fatty Acid Profile and Putative Sialic Acid Metabolism

• Published in: Frontiers in Microbiology
• Main Authors: Qasim, Muhammad Suleman, Lampi, Mirka, Heinonen, Minna-Maria K., Garrido-Zabala, Berta, Bamford, Dennis H., Kaekelae, Reijo, Roine, Elina, Sarin, Leif Peter
• Format: Article in Journal/Newspaper
• Language: English
• Published: Univ Helsinki, Fac Biol & Environm Sci, RNAcious Lab, Mol & Integrat Biosciences Res Programme, Helsinki, Finland.;Univ Helsinki, Doctoral Programme Microbiol & Biotechnol, Helsinki, Finland. 2021
• Subjects: Shewanella; cold-active bacteria; sea ice; sialic acid metabolism; polyunsaturated (essential) fatty acids; Microbiology; Mikrobiologi; Sea ice
• Online Access: http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-512493; https://doi.org/10.3389/fmicb.2021.737641

Species of genus Shewanella are among the most frequently identified psychrotrophic bacteria. Here, we have studied the cellular properties, growth dynamics, and stress conditions of cold-active Shewanella strain #4, which was previously isolated from Baltic Sea ice. The cells are rod-shaped of similar to 2 mu m in length and 0.5 mu m in diameter, and they grow between 0 and 25 degrees C, with an optimum at 15 degrees C. The bacterium grows at a wide range of conditions, including 0.5-5.5% w/v NaCl (optimum 0.5-2% w/v NaCl), pH 5.5-10 (optimum pH 7.0), and up to 1mM hydrogen peroxide. In keeping with its adaptation to cold habitats, some polyunsaturated fatty acids, such as stearidonic acid (18:4n-3), eicosatetraenoic acid (20:4n-3), and eicosapentaenoic acid (20:5n-3), are produced at a higher level at low temperature. The genome is 4,456kb in size and has a GC content of 41.12%. Uniquely, strain #4 possesses genes for sialic acid metabolism and utilizes N-acetyl neuraminic acid as a carbon source. Interestingly, it also encodes for cytochrome c3 genes, which are known to facilitate environmental adaptation, including elevated temperatures and exposure to UV radiation. Phylogenetic analysis based on a consensus sequence of the seven 16S rRNA genes indicated that strain #4 belongs to genus Shewanella, closely associated with Shewanella aestuarii with a similar to 97% similarity, but with a low DNA-DNA hybridization (DDH) level of similar to 21%. However, average nucleotide identity (ANI) analysis defines strain #4 as a separate Shewanella species (ANI score=76). Further phylogenetic analysis based on the 92 most conserved genes places Shewanella strain #4 into a distinct phylogenetic clade with other cold-active marine Shewanella species. Considering the phylogenetic, phenotypic, and molecular characterization, we conclude that Shewanella strain #4 is a novel species and name it Shewanella glacialimarina sp. nov. TZS-4(T), where glacialimarina means sea ice. Consequently, S. glacialimarina TZS-4(T) constitutes a ...