Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?

International audience 1. Capture-recapture mixture models are important tools in evolution and ecology to estimate demographic parameters and abundance while accounting for individual heterogeneity. A key step is to select the correct number of mixture components i) to provide unbiased estimates th...

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Published in:Methods in Ecology and Evolution
Main Authors: Cubaynes, Sarah, Lavergne, Christian, Gimenez, Olivier, Marboutin, Eric
Other Authors: Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut de Mathématiques et de Modélisation de Montpellier (I3M), Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Université Paul-Valéry - Montpellier 3 (UPVM), Oncfs, ONCFS
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2012
Subjects:
Online Access:https://hal.science/hal-00707466
https://doi.org/10.1111/j.2041-210X.2011.00175.x
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collection HAL Portal Paul-Valéry University Montpellier 3
op_collection_id ftunmontpellier3
language English
topic capture-recapture
individual heterogeneity
classification
information criteria
mixture models
simulation experiment
[MATH.MATH-ST]Mathematics [math]/Statistics [math.ST]
[STAT.TH]Statistics [stat]/Statistics Theory [stat.TH]
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
spellingShingle capture-recapture
individual heterogeneity
classification
information criteria
mixture models
simulation experiment
[MATH.MATH-ST]Mathematics [math]/Statistics [math.ST]
[STAT.TH]Statistics [stat]/Statistics Theory [stat.TH]
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
Cubaynes, Sarah
Lavergne, Christian
Gimenez, Olivier
Marboutin, Eric
Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
topic_facet capture-recapture
individual heterogeneity
classification
information criteria
mixture models
simulation experiment
[MATH.MATH-ST]Mathematics [math]/Statistics [math.ST]
[STAT.TH]Statistics [stat]/Statistics Theory [stat.TH]
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
description International audience 1. Capture-recapture mixture models are important tools in evolution and ecology to estimate demographic parameters and abundance while accounting for individual heterogeneity. A key step is to select the correct number of mixture components i) to provide unbiased estimates that can be used as reliable proxies of fitness or ingredients in management strategies and ii) classify individuals into biologically meaningful classes. However, there is no consensus method in the statistical literature for selecting the number of components. 2. In ecology, most studies rely on the Akaike Information Criterion (AIC) and the Bayesian Information Criterion (BIC) that has recently gained attention in ecology. The Integrated Completed Likelihood criterion (ICL; IEEE Transactions on Pattern Analysis and Machine Intelligence, 2000, 22, 719) was specifically developed to favour well-separated components, but its use has never been investigated in ecology. 3. We compared the performance of AIC, BIC and ICL for selecting the number of components with regard to a) bias and accuracy of survival and detection estimates and b) success in selecting the true number of components using extensive simulations and data on wolf (Canis lupus) that were used for management through survival and abundance estimation. 4. Bias in survival and detection estimates was <0.02 for both AIC and BIC, and more than 0.09 for ICL, while mean square error was <0.05 for all criteria. As expected, bias increased as heterogeneity increased. Success rates of AIC and BIC in selecting the 'true' number of components were better than ICL (68% for AIC, 58% for BIC, and 16% for ICL). As the degree of heterogeneity increased, AIC (and BIC in a lesser extent) overestimated the number of components, while ICL often underestimated this number. For the wolf study, the 2-class model was selected by BIC and ICL, while AIC could not decide between the 2- and 3-class models. 5. We recommend using AIC or BIC when the aim is to estimate parameters. ...
author2 Centre d’Ecologie Fonctionnelle et Evolutive (CEFE)
Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE)
Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
Institut de Mathématiques et de Modélisation de Montpellier (I3M)
Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
Université Paul-Valéry - Montpellier 3 (UPVM)
Oncfs
ONCFS
format Article in Journal/Newspaper
author Cubaynes, Sarah
Lavergne, Christian
Gimenez, Olivier
Marboutin, Eric
author_facet Cubaynes, Sarah
Lavergne, Christian
Gimenez, Olivier
Marboutin, Eric
author_sort Cubaynes, Sarah
title Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
title_short Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
title_full Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
title_fullStr Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
title_full_unstemmed Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
title_sort assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models?
publisher HAL CCSD
publishDate 2012
url https://hal.science/hal-00707466
https://doi.org/10.1111/j.2041-210X.2011.00175.x
genre Canis lupus
genre_facet Canis lupus
op_source ISSN: 2041-210X
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spelling ftunmontpellier3:oai:HAL:hal-00707466v1 2024-05-19T07:38:46+00:00 Assessing individual heterogeneity using model selection criteria: how many mixture components in capture-recapture models? Cubaynes, Sarah Lavergne, Christian Gimenez, Olivier Marboutin, Eric Centre d’Ecologie Fonctionnelle et Evolutive (CEFE) Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) Institut de Mathématiques et de Modélisation de Montpellier (I3M) Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS) Université Paul-Valéry - Montpellier 3 (UPVM) Oncfs ONCFS 2012 https://hal.science/hal-00707466 https://doi.org/10.1111/j.2041-210X.2011.00175.x en eng HAL CCSD Wiley info:eu-repo/semantics/altIdentifier/doi/10.1111/j.2041-210X.2011.00175.x hal-00707466 https://hal.science/hal-00707466 doi:10.1111/j.2041-210X.2011.00175.x ISSN: 2041-210X EISSN: 2041-210X Methods in Ecology and Evolution https://hal.science/hal-00707466 Methods in Ecology and Evolution, 2012, 3 (3), pp.564-573. &#x27E8;10.1111/j.2041-210X.2011.00175.x&#x27E9; capture-recapture individual heterogeneity classification information criteria mixture models simulation experiment [MATH.MATH-ST]Mathematics [math]/Statistics [math.ST] [STAT.TH]Statistics [stat]/Statistics Theory [stat.TH] [SDE.BE]Environmental Sciences/Biodiversity and Ecology info:eu-repo/semantics/article Journal articles 2012 ftunmontpellier3 https://doi.org/10.1111/j.2041-210X.2011.00175.x 2024-04-22T16:57:07Z International audience 1. Capture-recapture mixture models are important tools in evolution and ecology to estimate demographic parameters and abundance while accounting for individual heterogeneity. A key step is to select the correct number of mixture components i) to provide unbiased estimates that can be used as reliable proxies of fitness or ingredients in management strategies and ii) classify individuals into biologically meaningful classes. However, there is no consensus method in the statistical literature for selecting the number of components. 2. In ecology, most studies rely on the Akaike Information Criterion (AIC) and the Bayesian Information Criterion (BIC) that has recently gained attention in ecology. The Integrated Completed Likelihood criterion (ICL; IEEE Transactions on Pattern Analysis and Machine Intelligence, 2000, 22, 719) was specifically developed to favour well-separated components, but its use has never been investigated in ecology. 3. We compared the performance of AIC, BIC and ICL for selecting the number of components with regard to a) bias and accuracy of survival and detection estimates and b) success in selecting the true number of components using extensive simulations and data on wolf (Canis lupus) that were used for management through survival and abundance estimation. 4. Bias in survival and detection estimates was <0.02 for both AIC and BIC, and more than 0.09 for ICL, while mean square error was <0.05 for all criteria. As expected, bias increased as heterogeneity increased. Success rates of AIC and BIC in selecting the 'true' number of components were better than ICL (68% for AIC, 58% for BIC, and 16% for ICL). As the degree of heterogeneity increased, AIC (and BIC in a lesser extent) overestimated the number of components, while ICL often underestimated this number. For the wolf study, the 2-class model was selected by BIC and ICL, while AIC could not decide between the 2- and 3-class models. 5. We recommend using AIC or BIC when the aim is to estimate parameters. ... Article in Journal/Newspaper Canis lupus HAL Portal Paul-Valéry University Montpellier 3 Methods in Ecology and Evolution 3 3 564 573