Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica

Archaea are the least understood members of the microbial community in Antarctic mineral soils. Although their occurrence in Antarctic coastal soils has been previously documented, little is known about their distribution in soils across the McMurdo Dry Valleys, Victoria Land. In this study, termina...

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Published in:FEMS Microbiology Ecology
Main Authors: Richter, Ingrid, Herbold, Craig W., Lee, Charles Kai-Wu, McDonald, Ian R., Barrett, John E., Cary, S. Craig
Format: Article in Journal/Newspaper
Language:English
Published: John Wiley & Sons Ltd 2014
Subjects:
Online Access:https://hdl.handle.net/10289/8933
https://doi.org/10.1111/1574-6941.12322
id ftunivwaikato:oai:researchcommons.waikato.ac.nz:10289/8933
record_format openpolar
spelling ftunivwaikato:oai:researchcommons.waikato.ac.nz:10289/8933 2024-01-28T09:59:04+01:00 Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica Richter, Ingrid Herbold, Craig W. Lee, Charles Kai-Wu McDonald, Ian R. Barrett, John E. Cary, S. Craig 2014 1 - 13 application/pdf https://hdl.handle.net/10289/8933 https://doi.org/10.1111/1574-6941.12322 en eng John Wiley & Sons Ltd Fems Microbiology Ecology Richter, I., Herbold, C. W., Lee, C. K.-W., McDonald, I. R., Barrett, J. E., & Cary, S. C. (2014). Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica. Fems Microbiology Ecology, 89(2), 347–359. http://doi.org/10.1111/1574-6941.12322 1574-6941 https://hdl.handle.net/10289/8933 doi:10.1111/1574-6941.12322 This is an author’s accepted version of an article published in the journal: FEMS Micriobiology Ecology. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. Antarctic soils Archaea Euryarchaeota Thaumarchaeota pyrosequencing Journal Article 2014 ftunivwaikato https://doi.org/10.1111/1574-6941.12322 2024-01-02T18:25:26Z Archaea are the least understood members of the microbial community in Antarctic mineral soils. Although their occurrence in Antarctic coastal soils has been previously documented, little is known about their distribution in soils across the McMurdo Dry Valleys, Victoria Land. In this study, terminal-restriction fragment length polymorphism (t-RFLP) analysis and 454 pyrosequencing were coupled with a detailed analysis of soil physicochemical properties to characterize archaeal diversity and identify environmental factors that might shape and maintain archaeal communities in soils of the three southern most McMurdo Dry Valleys (Garwood, Marshall, and Miers Valley). Archaea were successfully detected in all inland and coastal mineral soils tested, revealing a low overall richness (mean of six operational taxonomic units [OTUs] per sample site). However, OTU richness was higher in some soils and this higher richness was positively correlated with soil water content, indicating water as a main driver of archaeal community richness. In total, 18 archaeal OTUs were detected, predominately Thaumarchaeota affiliated with Marine Group 1.1b (> 80% of all archaeal sequences recovered). Less abundant OTUs (2% of all archaeal sequences) were loosely related to members of the phylum Euryarchaeota. This is the first comprehensive study showing a widespread presence and distribution of Archaea in inland Antarctic soils. Article in Journal/Newspaper Antarc* Antarctic Antarctica McMurdo Dry Valleys Victoria Land The University of Waikato: Research Commons Antarctic Garwood ENVELOPE(164.283,164.283,-78.033,-78.033) McMurdo Dry Valleys Miers ENVELOPE(163.850,163.850,-78.100,-78.100) Miers Valley ENVELOPE(164.200,164.200,-78.100,-78.100) Victoria Land FEMS Microbiology Ecology 89 2 347 359
institution Open Polar
collection The University of Waikato: Research Commons
op_collection_id ftunivwaikato
language English
topic Antarctic soils
Archaea
Euryarchaeota
Thaumarchaeota
pyrosequencing
spellingShingle Antarctic soils
Archaea
Euryarchaeota
Thaumarchaeota
pyrosequencing
Richter, Ingrid
Herbold, Craig W.
Lee, Charles Kai-Wu
McDonald, Ian R.
Barrett, John E.
Cary, S. Craig
Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica
topic_facet Antarctic soils
Archaea
Euryarchaeota
Thaumarchaeota
pyrosequencing
description Archaea are the least understood members of the microbial community in Antarctic mineral soils. Although their occurrence in Antarctic coastal soils has been previously documented, little is known about their distribution in soils across the McMurdo Dry Valleys, Victoria Land. In this study, terminal-restriction fragment length polymorphism (t-RFLP) analysis and 454 pyrosequencing were coupled with a detailed analysis of soil physicochemical properties to characterize archaeal diversity and identify environmental factors that might shape and maintain archaeal communities in soils of the three southern most McMurdo Dry Valleys (Garwood, Marshall, and Miers Valley). Archaea were successfully detected in all inland and coastal mineral soils tested, revealing a low overall richness (mean of six operational taxonomic units [OTUs] per sample site). However, OTU richness was higher in some soils and this higher richness was positively correlated with soil water content, indicating water as a main driver of archaeal community richness. In total, 18 archaeal OTUs were detected, predominately Thaumarchaeota affiliated with Marine Group 1.1b (> 80% of all archaeal sequences recovered). Less abundant OTUs (2% of all archaeal sequences) were loosely related to members of the phylum Euryarchaeota. This is the first comprehensive study showing a widespread presence and distribution of Archaea in inland Antarctic soils.
format Article in Journal/Newspaper
author Richter, Ingrid
Herbold, Craig W.
Lee, Charles Kai-Wu
McDonald, Ian R.
Barrett, John E.
Cary, S. Craig
author_facet Richter, Ingrid
Herbold, Craig W.
Lee, Charles Kai-Wu
McDonald, Ian R.
Barrett, John E.
Cary, S. Craig
author_sort Richter, Ingrid
title Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica
title_short Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica
title_full Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica
title_fullStr Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica
title_full_unstemmed Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica
title_sort influence of soil properties on archaeal diversity and distribution in the mcmurdo dry valleys, antarctica
publisher John Wiley & Sons Ltd
publishDate 2014
url https://hdl.handle.net/10289/8933
https://doi.org/10.1111/1574-6941.12322
long_lat ENVELOPE(164.283,164.283,-78.033,-78.033)
ENVELOPE(163.850,163.850,-78.100,-78.100)
ENVELOPE(164.200,164.200,-78.100,-78.100)
geographic Antarctic
Garwood
McMurdo Dry Valleys
Miers
Miers Valley
Victoria Land
geographic_facet Antarctic
Garwood
McMurdo Dry Valleys
Miers
Miers Valley
Victoria Land
genre Antarc*
Antarctic
Antarctica
McMurdo Dry Valleys
Victoria Land
genre_facet Antarc*
Antarctic
Antarctica
McMurdo Dry Valleys
Victoria Land
op_relation Fems Microbiology Ecology
Richter, I., Herbold, C. W., Lee, C. K.-W., McDonald, I. R., Barrett, J. E., & Cary, S. C. (2014). Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica. Fems Microbiology Ecology, 89(2), 347–359. http://doi.org/10.1111/1574-6941.12322
1574-6941
https://hdl.handle.net/10289/8933
doi:10.1111/1574-6941.12322
op_rights This is an author’s accepted version of an article published in the journal: FEMS Micriobiology Ecology. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd.
op_doi https://doi.org/10.1111/1574-6941.12322
container_title FEMS Microbiology Ecology
container_volume 89
container_issue 2
container_start_page 347
op_container_end_page 359
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