Development of a machine learning detector for North Atlantic humpback whale song

The study of humpback whale song using passive acoustic monitoring devices requires bioacousticians to manually review hours of audio recordings to annotate the signals. To vastly reduce the time of manual annotation throughautomation, a machine learning model was developed. Convolutional neural net...

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Published in:The Journal of the Acoustical Society of America
Main Authors: Kather, Vincent, Seipel, Fabian, Berges, Benoit, Davis, Genevieve, Gibson, Catherine, Harvey, Matt, Henry, Lea-Anne, Stevenson, Andrew, Risch, Denise
Format: Article in Journal/Newspaper
Language:English
Published: 2024
Subjects:
Online Access:https://research.wur.nl/en/publications/development-of-a-machine-learning-detector-for-north-atlantic-hum
https://doi.org/10.1121/10.0025275
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spelling ftunivwagenin:oai:library.wur.nl:wurpubs/628018 2024-04-28T08:23:21+00:00 Development of a machine learning detector for North Atlantic humpback whale song Kather, Vincent Seipel, Fabian Berges, Benoit Davis, Genevieve Gibson, Catherine Harvey, Matt Henry, Lea-Anne Stevenson, Andrew Risch, Denise 2024 application/pdf https://research.wur.nl/en/publications/development-of-a-machine-learning-detector-for-north-atlantic-hum https://doi.org/10.1121/10.0025275 en eng https://edepot.wur.nl/652747 https://research.wur.nl/en/publications/development-of-a-machine-learning-detector-for-north-atlantic-hum doi:10.1121/10.0025275 https://creativecommons.org/licenses/by/4.0/ Wageningen University & Research Journal of the Acoustical Society of America 155 (2024) 3 ISSN: 0001-4966 Life Science Article/Letter to editor 2024 ftunivwagenin https://doi.org/10.1121/10.0025275 2024-04-09T23:33:25Z The study of humpback whale song using passive acoustic monitoring devices requires bioacousticians to manually review hours of audio recordings to annotate the signals. To vastly reduce the time of manual annotation throughautomation, a machine learning model was developed. Convolutional neural networks have made major advances in the previous decade, leading to a wide range of applications, including the detection of frequency modulatedvocalizations by cetaceans. A large dataset of over 60 000 audio segments of 4 s length is collected from the North Atlantic and used to fine-tune an existing model for humpback whale song detection in the North Pacific (see Allen,Harvey, Harrell, Jansen, Merkens, Wall, Cattiau, and Oleson (2021). Front. Mar. Sci. 8, 607321). Furthermore, different data augmentation techniques (time-shift, noise augmentation, and masking) are used to artificially increasethe variability within the training set. Retraining and augmentation yield F-score values of 0.88 on context window basis and 0.89 on hourly basis with false positive rates of 0.05 on context window basis and 0.01 on hourly basis. Ifnecessary, usage and retraining of the existing model is made convenient by a framework (AcoDet, acoustic detector) built during this project. Combining the tools provided by this framework could save researchers hours of manualannotation time and, thus, accelerate their research. Article in Journal/Newspaper Humpback Whale North Atlantic Wageningen UR (University & Research Centre): Digital Library The Journal of the Acoustical Society of America 155 3 2050 2064
institution Open Polar
collection Wageningen UR (University & Research Centre): Digital Library
op_collection_id ftunivwagenin
language English
topic Life Science
spellingShingle Life Science
Kather, Vincent
Seipel, Fabian
Berges, Benoit
Davis, Genevieve
Gibson, Catherine
Harvey, Matt
Henry, Lea-Anne
Stevenson, Andrew
Risch, Denise
Development of a machine learning detector for North Atlantic humpback whale song
topic_facet Life Science
description The study of humpback whale song using passive acoustic monitoring devices requires bioacousticians to manually review hours of audio recordings to annotate the signals. To vastly reduce the time of manual annotation throughautomation, a machine learning model was developed. Convolutional neural networks have made major advances in the previous decade, leading to a wide range of applications, including the detection of frequency modulatedvocalizations by cetaceans. A large dataset of over 60 000 audio segments of 4 s length is collected from the North Atlantic and used to fine-tune an existing model for humpback whale song detection in the North Pacific (see Allen,Harvey, Harrell, Jansen, Merkens, Wall, Cattiau, and Oleson (2021). Front. Mar. Sci. 8, 607321). Furthermore, different data augmentation techniques (time-shift, noise augmentation, and masking) are used to artificially increasethe variability within the training set. Retraining and augmentation yield F-score values of 0.88 on context window basis and 0.89 on hourly basis with false positive rates of 0.05 on context window basis and 0.01 on hourly basis. Ifnecessary, usage and retraining of the existing model is made convenient by a framework (AcoDet, acoustic detector) built during this project. Combining the tools provided by this framework could save researchers hours of manualannotation time and, thus, accelerate their research.
format Article in Journal/Newspaper
author Kather, Vincent
Seipel, Fabian
Berges, Benoit
Davis, Genevieve
Gibson, Catherine
Harvey, Matt
Henry, Lea-Anne
Stevenson, Andrew
Risch, Denise
author_facet Kather, Vincent
Seipel, Fabian
Berges, Benoit
Davis, Genevieve
Gibson, Catherine
Harvey, Matt
Henry, Lea-Anne
Stevenson, Andrew
Risch, Denise
author_sort Kather, Vincent
title Development of a machine learning detector for North Atlantic humpback whale song
title_short Development of a machine learning detector for North Atlantic humpback whale song
title_full Development of a machine learning detector for North Atlantic humpback whale song
title_fullStr Development of a machine learning detector for North Atlantic humpback whale song
title_full_unstemmed Development of a machine learning detector for North Atlantic humpback whale song
title_sort development of a machine learning detector for north atlantic humpback whale song
publishDate 2024
url https://research.wur.nl/en/publications/development-of-a-machine-learning-detector-for-north-atlantic-hum
https://doi.org/10.1121/10.0025275
genre Humpback Whale
North Atlantic
genre_facet Humpback Whale
North Atlantic
op_source Journal of the Acoustical Society of America 155 (2024) 3
ISSN: 0001-4966
op_relation https://edepot.wur.nl/652747
https://research.wur.nl/en/publications/development-of-a-machine-learning-detector-for-north-atlantic-hum
doi:10.1121/10.0025275
op_rights https://creativecommons.org/licenses/by/4.0/
Wageningen University & Research
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