Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient
In this study we assessed prokaryotic community and metabolite profiles of the three deep sea sponges: W. bursa, S. fortis and G. barretti collected at the Davis Strait at depth range of 200 - 1400 m. Microbial composition was investigated using 16S rRNA gene amplicon sequencing by applying the Illu...
Main Authors: | , , , , , , , , , , |
---|---|
Format: | Other/Unknown Material |
Language: | unknown |
Published: |
Wageningen University
2018
|
Subjects: | |
Online Access: | https://research.wur.nl/en/datasets/microbiota-composition-and-metabolomic-profiles-of-the-deep-sea-s |
id |
ftunivwagenin:oai:library.wur.nl:wurpubs/612074 |
---|---|
record_format |
openpolar |
spelling |
ftunivwagenin:oai:library.wur.nl:wurpubs/612074 2024-02-04T09:59:59+01:00 Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient Steffen, Karin Indraningrat, Anak Erngren, Ida Haglöf, Jakob Becking, Lisa Smidt, Hauke Yashayaev, Igor Kenchington, Ellen Pettersson, Curt Cárdenas, Paco Sipkema, Detmer 2018 text/html https://research.wur.nl/en/datasets/microbiota-composition-and-metabolomic-profiles-of-the-deep-sea-s unknown Wageningen University info:eu-repo/grantAgreement/EC/H2020/679849 https://edepot.wur.nl/589518 https://research.wur.nl/en/datasets/microbiota-composition-and-metabolomic-profiles-of-the-deep-sea-s info:eu-repo/semantics/openAccess Wageningen University & Research Geodia barretti Raw sequence reads Stryphnus fortis Weberella bursa deep sea sponges info:eu-repo/semantics/other info:eu-repo/semantics/publishedVersion 2018 ftunivwagenin 2024-01-10T23:16:58Z In this study we assessed prokaryotic community and metabolite profiles of the three deep sea sponges: W. bursa, S. fortis and G. barretti collected at the Davis Strait at depth range of 200 - 1400 m. Microbial composition was investigated using 16S rRNA gene amplicon sequencing by applying the Illumina MiSeq technology and metabolomic profiles were screened using UPLC-QTOF mass spectrometry. The overall aim of this study is to investigate to what extend depth influences microbial composition and metabolite profiles of the deep sea sponges. Other/Unknown Material Davis Strait Wageningen UR (University & Research Centre): Digital Library |
institution |
Open Polar |
collection |
Wageningen UR (University & Research Centre): Digital Library |
op_collection_id |
ftunivwagenin |
language |
unknown |
topic |
Geodia barretti Raw sequence reads Stryphnus fortis Weberella bursa deep sea sponges |
spellingShingle |
Geodia barretti Raw sequence reads Stryphnus fortis Weberella bursa deep sea sponges Steffen, Karin Indraningrat, Anak Erngren, Ida Haglöf, Jakob Becking, Lisa Smidt, Hauke Yashayaev, Igor Kenchington, Ellen Pettersson, Curt Cárdenas, Paco Sipkema, Detmer Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient |
topic_facet |
Geodia barretti Raw sequence reads Stryphnus fortis Weberella bursa deep sea sponges |
description |
In this study we assessed prokaryotic community and metabolite profiles of the three deep sea sponges: W. bursa, S. fortis and G. barretti collected at the Davis Strait at depth range of 200 - 1400 m. Microbial composition was investigated using 16S rRNA gene amplicon sequencing by applying the Illumina MiSeq technology and metabolomic profiles were screened using UPLC-QTOF mass spectrometry. The overall aim of this study is to investigate to what extend depth influences microbial composition and metabolite profiles of the deep sea sponges. |
format |
Other/Unknown Material |
author |
Steffen, Karin Indraningrat, Anak Erngren, Ida Haglöf, Jakob Becking, Lisa Smidt, Hauke Yashayaev, Igor Kenchington, Ellen Pettersson, Curt Cárdenas, Paco Sipkema, Detmer |
author_facet |
Steffen, Karin Indraningrat, Anak Erngren, Ida Haglöf, Jakob Becking, Lisa Smidt, Hauke Yashayaev, Igor Kenchington, Ellen Pettersson, Curt Cárdenas, Paco Sipkema, Detmer |
author_sort |
Steffen, Karin |
title |
Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient |
title_short |
Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient |
title_full |
Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient |
title_fullStr |
Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient |
title_full_unstemmed |
Microbiota composition and metabolomic profiles of the deep sea sponges Weberella bursa, Stryphnus fortis and Geodia barretti along a depth gradient |
title_sort |
microbiota composition and metabolomic profiles of the deep sea sponges weberella bursa, stryphnus fortis and geodia barretti along a depth gradient |
publisher |
Wageningen University |
publishDate |
2018 |
url |
https://research.wur.nl/en/datasets/microbiota-composition-and-metabolomic-profiles-of-the-deep-sea-s |
genre |
Davis Strait |
genre_facet |
Davis Strait |
op_relation |
info:eu-repo/grantAgreement/EC/H2020/679849 https://edepot.wur.nl/589518 https://research.wur.nl/en/datasets/microbiota-composition-and-metabolomic-profiles-of-the-deep-sea-s |
op_rights |
info:eu-repo/semantics/openAccess Wageningen University & Research |
_version_ |
1789965052470624256 |