Molecular interaction studies of initial electrostatic attraction between trypsin and the human PAR-2 receptor

• Main Author: Kristoffersen, Tonje Håtveit
• Format: Master Thesis
• Language: English
• Published: UiT Norges arktiske universitet 2020
• Subjects: VDP::Medisinske Fag: 700::Basale medisinske; odontologiske og veterinærmedisinske fag: 710::Toksikologi: 730; VDP::Medical disciplines: 700::Basic medical; dental and veterinary science disciplines: 710::Toxicology: 730; MBI-3911; Pacific; Red king crab
• Online Access: https://hdl.handle.net/10037/18551

Workers in livestock and fish cultivation are at increased risk of occupational airway damage caused by proteases. Proteases, such as trypsin, activate PAR-2 which in turn triggers an inflammatory response, potentially causing airway damage over time. There has been some speculation that PAR-2 receptors easier attract trypsin form species where this enzyme has a more negative electrostatic charge. A molecular modelling approach was used to assess the initial binding of the activating peptide segment of PAR-2 to trypsin from multiple animal species. Homology modelling was used to predict the structures of Pacific sardine trypsin, yellowtail trypsin and red king crab trypsin, as well as to construct the N-terminal peptide segment of PAR-2. Protein-protein docking was performed to predict initial surface interactions between the PAR-2 peptide segment and trypsin. The binding interaction was mapped, and the interacting amino acids were compared across the species, as well as the charge of the protein binding surfaces. The study indicates that there is, at least, a stronger initial interaction between the N-terminal peptide segment of PAR-2 and trypsin with a stronger negative charge.