Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis

Published version, available at: https://doi.org/10.1371/journal.pone.0210358 Ocean acidification threatens to disrupt interactions between organisms throughout marine ecosystems. The diversity of reef-building organisms decreases as seawater CO2 increases along natural gradients, yet soft-bodied an...

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Published in:PLOS ONE
Main Authors: Urbarova, Ilona, Forêt, Sylvain, Dahl, Mikael Per, Emblem, Åse E., Milazzo, Marco, Hall-Spencer, Jason M., Johansen, Steinar Daae
Format: Article in Journal/Newspaper
Language:English
Published: PLOS 2019
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Online Access:https://hdl.handle.net/10037/15777
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spelling ftunivtroemsoe:oai:munin.uit.no:10037/15777 2023-05-15T17:50:04+02:00 Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis Urbarova, Ilona Forêt, Sylvain Dahl, Mikael Per Emblem, Åse E. Milazzo, Marco Hall-Spencer, Jason M. Johansen, Steinar Daae 2019-05-08 https://hdl.handle.net/10037/15777 eng eng PLOS The RNA-seq raw sequencing data sets of twelve individuals of Anemonia viridis used in this study together with the transcriptome assembly are archived at NCBI’s Sequence Read Archive (SRA) under accession number PRJNA448978. The Transcriptome Shotgun Assembly (TSA) has been deposited at DDBJ/EMBL/GenBank under the accession GHCD00000000. The version described in this paper is the first version, GHCD01000000. PLoS ONE Urbarova, I., Forêt, S., Dahl, M.P., Emblem, Å.E., Milazzo, M., Hall-Spencer, J.M., Johansen, S.D. (2019) Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis. PLoS ONE. 2019;14 , (5). https://doi.org/10.1371/journal.pone.0210358 FRIDAID 1703482 1932-6203 https://hdl.handle.net/10037/15777 openAccess VDP::Mathematics and natural science: 400::Basic biosciences: 470 VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470 Journal article Peer reviewed 2019 ftunivtroemsoe https://doi.org/10.1371/journal.pone.0210358 2021-06-25T17:56:38Z Published version, available at: https://doi.org/10.1371/journal.pone.0210358 Ocean acidification threatens to disrupt interactions between organisms throughout marine ecosystems. The diversity of reef-building organisms decreases as seawater CO2 increases along natural gradients, yet soft-bodied animals, such as sea anemones, are often resilient. We sequenced the polyA-enriched transcriptome of adult sea anemone Anemonia viridis and its dinoflagellate symbiont sampled along a natural CO2 gradient in Italy to assess stress levels in these organisms. We found that about 1.4% of the anemone transcripts, but only ~0.5% of the Symbiodinium sp. transcripts were differentially expressed. Processes enriched at high seawater CO2 were mainly linked to cellular stress, including significant up-regulation of protective cellular functions and deregulation of metabolic pathways. Transposable elements were differentially expressed at high seawater CO2, with an extreme up-regulation (> 100-fold) of the BEL-family of long terminal repeat retrotransposons. Seawater acidified by CO2 generated a significant stress reaction in A. viridis, but no bleaching was observed and Symbiodinium sp. appeared to be less affected. These observed changes indicate the mechanisms by which A. viridis acclimate to survive chronic exposure to ocean acidification conditions. We conclude that many organisms that are common in acidified conditions may nevertheless incur costs due to hypercapnia and/or lowered carbonate saturation states. Article in Journal/Newspaper Ocean acidification University of Tromsø: Munin Open Research Archive PLOS ONE 14 5 e0210358
institution Open Polar
collection University of Tromsø: Munin Open Research Archive
op_collection_id ftunivtroemsoe
language English
topic VDP::Mathematics and natural science: 400::Basic biosciences: 470
VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470
spellingShingle VDP::Mathematics and natural science: 400::Basic biosciences: 470
VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470
Urbarova, Ilona
Forêt, Sylvain
Dahl, Mikael Per
Emblem, Åse E.
Milazzo, Marco
Hall-Spencer, Jason M.
Johansen, Steinar Daae
Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
topic_facet VDP::Mathematics and natural science: 400::Basic biosciences: 470
VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470
description Published version, available at: https://doi.org/10.1371/journal.pone.0210358 Ocean acidification threatens to disrupt interactions between organisms throughout marine ecosystems. The diversity of reef-building organisms decreases as seawater CO2 increases along natural gradients, yet soft-bodied animals, such as sea anemones, are often resilient. We sequenced the polyA-enriched transcriptome of adult sea anemone Anemonia viridis and its dinoflagellate symbiont sampled along a natural CO2 gradient in Italy to assess stress levels in these organisms. We found that about 1.4% of the anemone transcripts, but only ~0.5% of the Symbiodinium sp. transcripts were differentially expressed. Processes enriched at high seawater CO2 were mainly linked to cellular stress, including significant up-regulation of protective cellular functions and deregulation of metabolic pathways. Transposable elements were differentially expressed at high seawater CO2, with an extreme up-regulation (> 100-fold) of the BEL-family of long terminal repeat retrotransposons. Seawater acidified by CO2 generated a significant stress reaction in A. viridis, but no bleaching was observed and Symbiodinium sp. appeared to be less affected. These observed changes indicate the mechanisms by which A. viridis acclimate to survive chronic exposure to ocean acidification conditions. We conclude that many organisms that are common in acidified conditions may nevertheless incur costs due to hypercapnia and/or lowered carbonate saturation states.
format Article in Journal/Newspaper
author Urbarova, Ilona
Forêt, Sylvain
Dahl, Mikael Per
Emblem, Åse E.
Milazzo, Marco
Hall-Spencer, Jason M.
Johansen, Steinar Daae
author_facet Urbarova, Ilona
Forêt, Sylvain
Dahl, Mikael Per
Emblem, Åse E.
Milazzo, Marco
Hall-Spencer, Jason M.
Johansen, Steinar Daae
author_sort Urbarova, Ilona
title Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
title_short Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
title_full Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
title_fullStr Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
title_full_unstemmed Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
title_sort ocean acidification at a coastal co2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone anemonia viridis
publisher PLOS
publishDate 2019
url https://hdl.handle.net/10037/15777
genre Ocean acidification
genre_facet Ocean acidification
op_relation The RNA-seq raw sequencing data sets of twelve individuals of Anemonia viridis used in this study together with the transcriptome assembly are archived at NCBI’s Sequence Read Archive (SRA) under accession number PRJNA448978. The Transcriptome Shotgun Assembly (TSA) has been deposited at DDBJ/EMBL/GenBank under the accession GHCD00000000. The version described in this paper is the first version, GHCD01000000.
PLoS ONE
Urbarova, I., Forêt, S., Dahl, M.P., Emblem, Å.E., Milazzo, M., Hall-Spencer, J.M., Johansen, S.D. (2019) Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis. PLoS ONE. 2019;14 , (5). https://doi.org/10.1371/journal.pone.0210358
FRIDAID 1703482
1932-6203
https://hdl.handle.net/10037/15777
op_rights openAccess
op_doi https://doi.org/10.1371/journal.pone.0210358
container_title PLOS ONE
container_volume 14
container_issue 5
container_start_page e0210358
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