A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific

The seas of the North Pacific Ocean are characterized by a large variety of fish fauna, including endemic species. Molecular genetic methods, often based on DNA barcoding approaches, have been recently used to determine species boundaries and identify cryptic diversity within these species. This stu...

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Main Authors: Turanov, Sergei V, Kartavtsev, Yuri Ph.
Format: Article in Journal/Newspaper
Language:unknown
Published: University of Toronto 2021
Subjects:
Online Access:http://hdl.handle.net/1807/106760
http://www.nrcresearchpress.com/doi/abs/10.1139/gen-2020-0192
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spelling ftunivtoronto:oai:tspace.library.utoronto.ca:1807/106760 2023-05-15T15:43:52+02:00 A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific Turanov, Sergei V Kartavtsev, Yuri Ph. 2021-03-27 application/pdf application/msword http://hdl.handle.net/1807/106760 http://www.nrcresearchpress.com/doi/abs/10.1139/gen-2020-0192 unknown University of Toronto 0831-2796 http://hdl.handle.net/1807/106760 http://www.nrcresearchpress.com/doi/abs/10.1139/gen-2020-0192 Article Article Post-Print 2021 ftunivtoronto 2021-10-31T18:16:19Z The seas of the North Pacific Ocean are characterized by a large variety of fish fauna, including endemic species. Molecular genetic methods, often based on DNA barcoding approaches, have been recently used to determine species boundaries and identify cryptic diversity within these species. This study complements the DNA barcode library of fish from the Northeast Pacific area. A library based on 154 sequences of the mitochondrial COI gene from 44 species was assembled and analyzed. It was found that 39 species (89%) can be unambiguously identified by the clear thresholds forming a barcoding gap. Deviations from the standard 2% threshold value resulted in detection of the species Enophrys lucasi in the sample, which is not typical for the eastern part of the Bering Sea. This barcoding gap also made it possible to identify naturally occurring low values of interspecific divergence of eulittoral taxa Aspidophoroides and the deep-sea genus Coryphaenoides. Synonymy of the genus Albatrossia in favor of the genus Coryphaenoides is suggested based on both the original and previously published data. The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author. Article in Journal/Newspaper Bering Sea University of Toronto: Research Repository T-Space Bering Sea Pacific
institution Open Polar
collection University of Toronto: Research Repository T-Space
op_collection_id ftunivtoronto
language unknown
description The seas of the North Pacific Ocean are characterized by a large variety of fish fauna, including endemic species. Molecular genetic methods, often based on DNA barcoding approaches, have been recently used to determine species boundaries and identify cryptic diversity within these species. This study complements the DNA barcode library of fish from the Northeast Pacific area. A library based on 154 sequences of the mitochondrial COI gene from 44 species was assembled and analyzed. It was found that 39 species (89%) can be unambiguously identified by the clear thresholds forming a barcoding gap. Deviations from the standard 2% threshold value resulted in detection of the species Enophrys lucasi in the sample, which is not typical for the eastern part of the Bering Sea. This barcoding gap also made it possible to identify naturally occurring low values of interspecific divergence of eulittoral taxa Aspidophoroides and the deep-sea genus Coryphaenoides. Synonymy of the genus Albatrossia in favor of the genus Coryphaenoides is suggested based on both the original and previously published data. The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author.
format Article in Journal/Newspaper
author Turanov, Sergei V
Kartavtsev, Yuri Ph.
spellingShingle Turanov, Sergei V
Kartavtsev, Yuri Ph.
A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific
author_facet Turanov, Sergei V
Kartavtsev, Yuri Ph.
author_sort Turanov, Sergei V
title A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific
title_short A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific
title_full A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific
title_fullStr A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific
title_full_unstemmed A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific
title_sort complement to dna barcoding reference library for identification of fish from the northeast pacific
publisher University of Toronto
publishDate 2021
url http://hdl.handle.net/1807/106760
http://www.nrcresearchpress.com/doi/abs/10.1139/gen-2020-0192
geographic Bering Sea
Pacific
geographic_facet Bering Sea
Pacific
genre Bering Sea
genre_facet Bering Sea
op_relation 0831-2796
http://hdl.handle.net/1807/106760
http://www.nrcresearchpress.com/doi/abs/10.1139/gen-2020-0192
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