A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals

Foraging behaviour of marine predators inferred from the analysis of horizontal or vertical movements commonly lack quantitative information about foraging success. Several marine mammal species are known to perform dives where they passively drift in the water column, termed “drift” dives. The drif...

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Published in:Scientific Reports
Main Authors: Arce Gonzalez, F, Bestley, S, Hindell, MA, McMahon, CR, Wotherspoon, S
Format: Article in Journal/Newspaper
Language:English
Published: Nature Publishing Group 2019
Subjects:
Online Access:https://eprints.utas.edu.au/31143/
https://eprints.utas.edu.au/31143/1/134583%20-%20A%20quantitative,%20hierarchical%20approach%20for%20detecting%20drift%20dives%20and%20tracking%20buoyancy%20changes%20in%20southern%20elephant%20seals.pdf
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spelling ftunivtasmania:oai:eprints.utas.edu.au:31143 2023-05-15T16:05:39+02:00 A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals Arce Gonzalez, F Bestley, S Hindell, MA McMahon, CR Wotherspoon, S 2019 application/pdf https://eprints.utas.edu.au/31143/ https://eprints.utas.edu.au/31143/1/134583%20-%20A%20quantitative,%20hierarchical%20approach%20for%20detecting%20drift%20dives%20and%20tracking%20buoyancy%20changes%20in%20southern%20elephant%20seals.pdf en eng Nature Publishing Group https://eprints.utas.edu.au/31143/1/134583%20-%20A%20quantitative,%20hierarchical%20approach%20for%20detecting%20drift%20dives%20and%20tracking%20buoyancy%20changes%20in%20southern%20elephant%20seals.pdf Arce Gonzalez, F orcid:0000-0002-7622-3791 , Bestley, S orcid:0000-0001-9342-669X , Hindell, MA orcid:0000-0002-7823-7185 , McMahon, CR and Wotherspoon, S orcid:0000-0002-6947-4445 2019 , 'A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals' , Scientific Reports, vol. 9, no. 1 , pp. 1-13 , doi:10.1038/s41598-019-44970-1 <http://dx.doi.org/10.1038/s41598-019-44970-1>. Southern Ocean drift dives southern elephant seals marine predators foraging success biotelemetry Article PeerReviewed 2019 ftunivtasmania https://doi.org/10.1038/s41598-019-44970-1 2021-09-20T22:17:51Z Foraging behaviour of marine predators inferred from the analysis of horizontal or vertical movements commonly lack quantitative information about foraging success. Several marine mammal species are known to perform dives where they passively drift in the water column, termed “drift” dives. The drift rate is determined by the animal’s buoyancy, which can be used to make inference regarding body condition. Long term dive records retrieved via satellite uplink are often summarized before transmission. This loss of resolution hampers identification of drift dives. Here, we develop a flexible, hierarchically structured approach to identify drift dives and estimate the drift rate from the summarized time-depth profiles that are increasingly available to the global research community. Based on high-resolution dive data from southern elephant seals, we classify dives as drift/non-drift and apply a summarization algorithm. We then (i) automatically generate dive groups based on inflection point ordering using a ‘Reverse’ Broken-Stick Algorithm, (ii) develop a set of threshold criteria to apply across groups, ensuring non-drift dives are most efficiently rejected, and (iii) finally implement a custom Kalman filter to retain the remaining dives that are within the seals estimated drifting time series. Validation with independent data sets shows our method retains approximately 3% of all dives, of which 88% are true drift dives. The drift rate estimates are unbiased, with the upper 95% quantile of the mean squared error between the daily averaged summarized profiles using our method (SDDR) and the observed daily averaged drift rate (ODDR) being only 0.0015. The trend of the drifting time-series match expectations for capital breeders, showing the lowest body condition commencing foraging trips and a progressive improvement as they remain at sea. Our method offers sufficient resolution to track small changes in body condition at a fine temporal scale. This approach overcomes a long-term challenge for large existing and ongoing data collections, with potential application across other drift diving species. Enabling robust identification of foraging success at sea offers a rare and valuable opportunity for monitoring marine ecosystem productivity in space and time by tracking the success of a top predator. Article in Journal/Newspaper Elephant Seals Southern Elephant Seals Southern Ocean University of Tasmania: UTas ePrints Southern Ocean Scientific Reports 9 1
institution Open Polar
collection University of Tasmania: UTas ePrints
op_collection_id ftunivtasmania
language English
topic Southern Ocean
drift dives
southern elephant seals
marine predators
foraging success
biotelemetry
spellingShingle Southern Ocean
drift dives
southern elephant seals
marine predators
foraging success
biotelemetry
Arce Gonzalez, F
Bestley, S
Hindell, MA
McMahon, CR
Wotherspoon, S
A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
topic_facet Southern Ocean
drift dives
southern elephant seals
marine predators
foraging success
biotelemetry
description Foraging behaviour of marine predators inferred from the analysis of horizontal or vertical movements commonly lack quantitative information about foraging success. Several marine mammal species are known to perform dives where they passively drift in the water column, termed “drift” dives. The drift rate is determined by the animal’s buoyancy, which can be used to make inference regarding body condition. Long term dive records retrieved via satellite uplink are often summarized before transmission. This loss of resolution hampers identification of drift dives. Here, we develop a flexible, hierarchically structured approach to identify drift dives and estimate the drift rate from the summarized time-depth profiles that are increasingly available to the global research community. Based on high-resolution dive data from southern elephant seals, we classify dives as drift/non-drift and apply a summarization algorithm. We then (i) automatically generate dive groups based on inflection point ordering using a ‘Reverse’ Broken-Stick Algorithm, (ii) develop a set of threshold criteria to apply across groups, ensuring non-drift dives are most efficiently rejected, and (iii) finally implement a custom Kalman filter to retain the remaining dives that are within the seals estimated drifting time series. Validation with independent data sets shows our method retains approximately 3% of all dives, of which 88% are true drift dives. The drift rate estimates are unbiased, with the upper 95% quantile of the mean squared error between the daily averaged summarized profiles using our method (SDDR) and the observed daily averaged drift rate (ODDR) being only 0.0015. The trend of the drifting time-series match expectations for capital breeders, showing the lowest body condition commencing foraging trips and a progressive improvement as they remain at sea. Our method offers sufficient resolution to track small changes in body condition at a fine temporal scale. This approach overcomes a long-term challenge for large existing and ongoing data collections, with potential application across other drift diving species. Enabling robust identification of foraging success at sea offers a rare and valuable opportunity for monitoring marine ecosystem productivity in space and time by tracking the success of a top predator.
format Article in Journal/Newspaper
author Arce Gonzalez, F
Bestley, S
Hindell, MA
McMahon, CR
Wotherspoon, S
author_facet Arce Gonzalez, F
Bestley, S
Hindell, MA
McMahon, CR
Wotherspoon, S
author_sort Arce Gonzalez, F
title A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
title_short A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
title_full A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
title_fullStr A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
title_full_unstemmed A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
title_sort quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals
publisher Nature Publishing Group
publishDate 2019
url https://eprints.utas.edu.au/31143/
https://eprints.utas.edu.au/31143/1/134583%20-%20A%20quantitative,%20hierarchical%20approach%20for%20detecting%20drift%20dives%20and%20tracking%20buoyancy%20changes%20in%20southern%20elephant%20seals.pdf
geographic Southern Ocean
geographic_facet Southern Ocean
genre Elephant Seals
Southern Elephant Seals
Southern Ocean
genre_facet Elephant Seals
Southern Elephant Seals
Southern Ocean
op_relation https://eprints.utas.edu.au/31143/1/134583%20-%20A%20quantitative,%20hierarchical%20approach%20for%20detecting%20drift%20dives%20and%20tracking%20buoyancy%20changes%20in%20southern%20elephant%20seals.pdf
Arce Gonzalez, F orcid:0000-0002-7622-3791 , Bestley, S orcid:0000-0001-9342-669X , Hindell, MA orcid:0000-0002-7823-7185 , McMahon, CR and Wotherspoon, S orcid:0000-0002-6947-4445 2019 , 'A quantitative, hierarchical approach for detecting drift dives and tracking buoyancy changes in southern elephant seals' , Scientific Reports, vol. 9, no. 1 , pp. 1-13 , doi:10.1038/s41598-019-44970-1 <http://dx.doi.org/10.1038/s41598-019-44970-1>.
op_doi https://doi.org/10.1038/s41598-019-44970-1
container_title Scientific Reports
container_volume 9
container_issue 1
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