Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus
Molecular (PCR) diagnostic tests for the detection and identification of aquareovirus in general, and Tasmanian Atlantic salmon reovirus (TSRV) specifically, were developed, and their diagnostic sensitivity and specificity were determined and compared with virus isolation in cell culture. Intralabor...
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ftunivtasecite:oai:ecite.utas.edu.au:96881 2023-05-15T15:30:35+02:00 Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus Zainathan, SC Carlile, G Carson, J McColl, KA Crane, MStJ Williams, LM Hoad, J Moody, NJG Aiken, HM Browning, GF Nowak, BF 2015 https://doi.org/10.1111/jfd.12291 http://www.ncbi.nlm.nih.gov/pubmed/25130771 http://ecite.utas.edu.au/96881 en eng Blackwell Publishing Ltd http://dx.doi.org/10.1111/jfd.12291 Zainathan, SC and Carlile, G and Carson, J and McColl, KA and Crane, MStJ and Williams, LM and Hoad, J and Moody, NJG and Aiken, HM and Browning, GF and Nowak, BF, Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus, Journal of Fish Diseases, 38, (8) pp. 739-754. ISSN 0140-7775 (2015) [Refereed Article] http://www.ncbi.nlm.nih.gov/pubmed/25130771 http://ecite.utas.edu.au/96881 Agricultural and Veterinary Sciences Fisheries Sciences Aquaculture Refereed Article PeerReviewed 2015 ftunivtasecite https://doi.org/10.1111/jfd.12291 2019-12-13T21:59:08Z Molecular (PCR) diagnostic tests for the detection and identification of aquareovirus in general, and Tasmanian Atlantic salmon reovirus (TSRV) specifically, were developed, and their diagnostic sensitivity and specificity were determined and compared with virus isolation in cell culture. Intralaboratory and interlaboratory comparison of PCR (conventional hemi-nested RT-PCR & RTqPCR) and virus isolation in cell culture using finfish cell lines, CHSE-214 and EPC, was carried out for the detection and identification of TSRV using field samples of farmed Atlantic salmon Salmo salar , L. from various aquaculture sites around Tasmania. The interlaboratory comparison of diagnostic methods was carried out between two laboratories, AAHL-CSIRO and DPIPWE Tasmania. A total of 144 fish from nine sites (1233 fish per site) were sampled from two regions of Tasmania (Tamar River estuary in the north and Huon River estuary in the south-east) during late spring to early summer of 2009, and the data were analysed using different statistical approaches. The prevalence of TSRV ranged from 6% to 22% in both regions. All the diagnostic methods (data from both laboratories) had high specificity, while the estimated sensitivity varied between tests with RT-qPCR being the most sensitive (95.2%) method followed by virus isolation and then conventional hemi-nested RT-PCR. Article in Journal/Newspaper Atlantic salmon Salmo salar eCite UTAS (University of Tasmania) Huon ENVELOPE(-57.998,-57.998,-63.367,-63.367) Journal of Fish Diseases 38 8 739 754 |
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Open Polar |
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eCite UTAS (University of Tasmania) |
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ftunivtasecite |
language |
English |
topic |
Agricultural and Veterinary Sciences Fisheries Sciences Aquaculture |
spellingShingle |
Agricultural and Veterinary Sciences Fisheries Sciences Aquaculture Zainathan, SC Carlile, G Carson, J McColl, KA Crane, MStJ Williams, LM Hoad, J Moody, NJG Aiken, HM Browning, GF Nowak, BF Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus |
topic_facet |
Agricultural and Veterinary Sciences Fisheries Sciences Aquaculture |
description |
Molecular (PCR) diagnostic tests for the detection and identification of aquareovirus in general, and Tasmanian Atlantic salmon reovirus (TSRV) specifically, were developed, and their diagnostic sensitivity and specificity were determined and compared with virus isolation in cell culture. Intralaboratory and interlaboratory comparison of PCR (conventional hemi-nested RT-PCR & RTqPCR) and virus isolation in cell culture using finfish cell lines, CHSE-214 and EPC, was carried out for the detection and identification of TSRV using field samples of farmed Atlantic salmon Salmo salar , L. from various aquaculture sites around Tasmania. The interlaboratory comparison of diagnostic methods was carried out between two laboratories, AAHL-CSIRO and DPIPWE Tasmania. A total of 144 fish from nine sites (1233 fish per site) were sampled from two regions of Tasmania (Tamar River estuary in the north and Huon River estuary in the south-east) during late spring to early summer of 2009, and the data were analysed using different statistical approaches. The prevalence of TSRV ranged from 6% to 22% in both regions. All the diagnostic methods (data from both laboratories) had high specificity, while the estimated sensitivity varied between tests with RT-qPCR being the most sensitive (95.2%) method followed by virus isolation and then conventional hemi-nested RT-PCR. |
format |
Article in Journal/Newspaper |
author |
Zainathan, SC Carlile, G Carson, J McColl, KA Crane, MStJ Williams, LM Hoad, J Moody, NJG Aiken, HM Browning, GF Nowak, BF |
author_facet |
Zainathan, SC Carlile, G Carson, J McColl, KA Crane, MStJ Williams, LM Hoad, J Moody, NJG Aiken, HM Browning, GF Nowak, BF |
author_sort |
Zainathan, SC |
title |
Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus |
title_short |
Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus |
title_full |
Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus |
title_fullStr |
Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus |
title_full_unstemmed |
Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus |
title_sort |
development and application of molecular methods (pcr) for detection of tasmanian atlantic salmon reovirus |
publisher |
Blackwell Publishing Ltd |
publishDate |
2015 |
url |
https://doi.org/10.1111/jfd.12291 http://www.ncbi.nlm.nih.gov/pubmed/25130771 http://ecite.utas.edu.au/96881 |
long_lat |
ENVELOPE(-57.998,-57.998,-63.367,-63.367) |
geographic |
Huon |
geographic_facet |
Huon |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
http://dx.doi.org/10.1111/jfd.12291 Zainathan, SC and Carlile, G and Carson, J and McColl, KA and Crane, MStJ and Williams, LM and Hoad, J and Moody, NJG and Aiken, HM and Browning, GF and Nowak, BF, Development and application of molecular methods (PCR) for detection of Tasmanian Atlantic salmon reovirus, Journal of Fish Diseases, 38, (8) pp. 739-754. ISSN 0140-7775 (2015) [Refereed Article] http://www.ncbi.nlm.nih.gov/pubmed/25130771 http://ecite.utas.edu.au/96881 |
op_doi |
https://doi.org/10.1111/jfd.12291 |
container_title |
Journal of Fish Diseases |
container_volume |
38 |
container_issue |
8 |
container_start_page |
739 |
op_container_end_page |
754 |
_version_ |
1766361039570468864 |