Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans
Background Dimethyl sulfide (DMS) is the dominant volatile organic sulfur in global oceans. The predominant source of oceanic DMS is the cleavage of dimethylsulfoniopropionate (DMSP), which can be produced by marine bacteria and phytoplankton. Polar oceans, which represent about one fifth of Earths...
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Online Access: | https://doi.org/10.1186/s40168-021-01153-3 http://www.ncbi.nlm.nih.gov/pubmed/34654476 http://ecite.utas.edu.au/147230 |
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ftunivtasecite:oai:ecite.utas.edu.au:147230 2023-05-15T13:59:46+02:00 Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans Teng, Z-J Qin, Q-L Zhang, W Li, J Fu, H-H Wang, P Lan, M Lu, G He, J McMinn, A Wang, M Chen, X-L Zhang, Y-Z Chen, Y Li, C-Y 2021 application/pdf https://doi.org/10.1186/s40168-021-01153-3 http://www.ncbi.nlm.nih.gov/pubmed/34654476 http://ecite.utas.edu.au/147230 en eng BioMed Central Ltd. http://ecite.utas.edu.au/147230/1/147230 - Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate.pdf http://dx.doi.org/10.1186/s40168-021-01153-3 Teng, Z-J and Qin, Q-L and Zhang, W and Li, J and Fu, H-H and Wang, P and Lan, M and Lu, G and He, J and McMinn, A and Wang, M and Chen, X-L and Zhang, Y-Z and Chen, Y and Li, C-Y, Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans, Microbiome, 9 Article 207. ISSN 2049-2618 (2021) [Refereed Article] http://www.ncbi.nlm.nih.gov/pubmed/34654476 http://ecite.utas.edu.au/147230 Biological Sciences Evolutionary biology Biogeography and phylogeography Refereed Article PeerReviewed 2021 ftunivtasecite https://doi.org/10.1186/s40168-021-01153-3 2021-12-27T23:17:55Z Background Dimethyl sulfide (DMS) is the dominant volatile organic sulfur in global oceans. The predominant source of oceanic DMS is the cleavage of dimethylsulfoniopropionate (DMSP), which can be produced by marine bacteria and phytoplankton. Polar oceans, which represent about one fifth of Earths surface, contribute significantly to the global oceanic DMS sea-air flux. However, a global overview of DMS and DMSP cycling in polar oceans is still lacking and the key genes and the microbial assemblages involved in DMSP/DMS transformation remain to be fully unveiled. Results Here, we systematically investigated the biogeographic traits of 16 key microbial enzymes involved in DMS/DMSP cycling in 60 metagenomic samples from polar waters, together with 174 metagenome and 151 metatranscriptomes from non-polar Tara Ocean dataset. Our analyses suggest that intense DMS/DMSP cycling occurs in the polar oceans. DMSP demethylase (DmdA), DMSP lyases (DddD, DddP, and DddK), and trimethylamine monooxygenase (Tmm, which oxidizes DMS to dimethylsulfoxide) were the most prevalent bacterial genes involved in global DMS/DMSP cycling. Alphaproteobacteria (Pelagibacterales) and Gammaproteobacteria appear to play prominent roles in DMS/DMSP cycling in polar oceans. The phenomenon that multiple DMS/DMSP cycling genes co-occurred in the same bacterial genome was also observed in metagenome assembled genomes (MAGs) from polar oceans. The microbial assemblages from the polar oceans were significantly correlated with water depth rather than geographic distance, suggesting the differences of habitats between surface and deep waters rather than dispersal limitation are the key factors shaping microbial assemblages involved in DMS/DMSP cycling in polar oceans. Conclusions Overall, this study provides a global overview of the biogeographic traits of known bacterial genes involved in DMS/DMSP cycling from the Arctic and Antarctic oceans, laying a solid foundation for further studies of DMS/DMSP cycling in polar ocean microbiome at the enzymatic, metabolic, and processual levels. Article in Journal/Newspaper Antarc* Antarctic Arctic Phytoplankton eCite UTAS (University of Tasmania) Antarctic Arctic Microbiome 9 1 |
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Open Polar |
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eCite UTAS (University of Tasmania) |
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ftunivtasecite |
language |
English |
topic |
Biological Sciences Evolutionary biology Biogeography and phylogeography |
spellingShingle |
Biological Sciences Evolutionary biology Biogeography and phylogeography Teng, Z-J Qin, Q-L Zhang, W Li, J Fu, H-H Wang, P Lan, M Lu, G He, J McMinn, A Wang, M Chen, X-L Zhang, Y-Z Chen, Y Li, C-Y Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
topic_facet |
Biological Sciences Evolutionary biology Biogeography and phylogeography |
description |
Background Dimethyl sulfide (DMS) is the dominant volatile organic sulfur in global oceans. The predominant source of oceanic DMS is the cleavage of dimethylsulfoniopropionate (DMSP), which can be produced by marine bacteria and phytoplankton. Polar oceans, which represent about one fifth of Earths surface, contribute significantly to the global oceanic DMS sea-air flux. However, a global overview of DMS and DMSP cycling in polar oceans is still lacking and the key genes and the microbial assemblages involved in DMSP/DMS transformation remain to be fully unveiled. Results Here, we systematically investigated the biogeographic traits of 16 key microbial enzymes involved in DMS/DMSP cycling in 60 metagenomic samples from polar waters, together with 174 metagenome and 151 metatranscriptomes from non-polar Tara Ocean dataset. Our analyses suggest that intense DMS/DMSP cycling occurs in the polar oceans. DMSP demethylase (DmdA), DMSP lyases (DddD, DddP, and DddK), and trimethylamine monooxygenase (Tmm, which oxidizes DMS to dimethylsulfoxide) were the most prevalent bacterial genes involved in global DMS/DMSP cycling. Alphaproteobacteria (Pelagibacterales) and Gammaproteobacteria appear to play prominent roles in DMS/DMSP cycling in polar oceans. The phenomenon that multiple DMS/DMSP cycling genes co-occurred in the same bacterial genome was also observed in metagenome assembled genomes (MAGs) from polar oceans. The microbial assemblages from the polar oceans were significantly correlated with water depth rather than geographic distance, suggesting the differences of habitats between surface and deep waters rather than dispersal limitation are the key factors shaping microbial assemblages involved in DMS/DMSP cycling in polar oceans. Conclusions Overall, this study provides a global overview of the biogeographic traits of known bacterial genes involved in DMS/DMSP cycling from the Arctic and Antarctic oceans, laying a solid foundation for further studies of DMS/DMSP cycling in polar ocean microbiome at the enzymatic, metabolic, and processual levels. |
format |
Article in Journal/Newspaper |
author |
Teng, Z-J Qin, Q-L Zhang, W Li, J Fu, H-H Wang, P Lan, M Lu, G He, J McMinn, A Wang, M Chen, X-L Zhang, Y-Z Chen, Y Li, C-Y |
author_facet |
Teng, Z-J Qin, Q-L Zhang, W Li, J Fu, H-H Wang, P Lan, M Lu, G He, J McMinn, A Wang, M Chen, X-L Zhang, Y-Z Chen, Y Li, C-Y |
author_sort |
Teng, Z-J |
title |
Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
title_short |
Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
title_full |
Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
title_fullStr |
Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
title_full_unstemmed |
Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
title_sort |
biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans |
publisher |
BioMed Central Ltd. |
publishDate |
2021 |
url |
https://doi.org/10.1186/s40168-021-01153-3 http://www.ncbi.nlm.nih.gov/pubmed/34654476 http://ecite.utas.edu.au/147230 |
geographic |
Antarctic Arctic |
geographic_facet |
Antarctic Arctic |
genre |
Antarc* Antarctic Arctic Phytoplankton |
genre_facet |
Antarc* Antarctic Arctic Phytoplankton |
op_relation |
http://ecite.utas.edu.au/147230/1/147230 - Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate.pdf http://dx.doi.org/10.1186/s40168-021-01153-3 Teng, Z-J and Qin, Q-L and Zhang, W and Li, J and Fu, H-H and Wang, P and Lan, M and Lu, G and He, J and McMinn, A and Wang, M and Chen, X-L and Zhang, Y-Z and Chen, Y and Li, C-Y, Biogeographic traits of dimethyl sulfide and dimethylsulfoniopropionate cycling in polar oceans, Microbiome, 9 Article 207. ISSN 2049-2618 (2021) [Refereed Article] http://www.ncbi.nlm.nih.gov/pubmed/34654476 http://ecite.utas.edu.au/147230 |
op_doi |
https://doi.org/10.1186/s40168-021-01153-3 |
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Microbiome |
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9 |
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