Global biogeography of SAR11 marine bacteria

The ubiquitous SAR11 bacterial clade is the most abundant type of organism in the world's oceans, but the reasons for its success are not fully elucidated. We analysed 128 surface marine metagenomes, including 37 new Antarctic metagenomes. The large size of the data set enabled internal transcr...

Full description

Bibliographic Details
Published in:Molecular Systems Biology
Main Authors: Brown, MV, Lauro, FM, DeMaere, MZ, Muir, D, Wilkins, D, Thomas, T, Riddle, MJ, Furhman, JA, Andrews-Pfannkoch, C, Hoffman, JM, McQuaid, JB, Allen, A, Rintoul, SR, Cavicchiolo, R
Format: Article in Journal/Newspaper
Language:English
Published: Wiley-Blackwell Publishing Ltd. 2012
Subjects:
Online Access:https://doi.org/10.1038/msb.2012.28
http://www.ncbi.nlm.nih.gov/pubmed/22806143
http://ecite.utas.edu.au/119084
id ftunivtasecite:oai:ecite.utas.edu.au:119084
record_format openpolar
spelling ftunivtasecite:oai:ecite.utas.edu.au:119084 2023-05-15T13:49:03+02:00 Global biogeography of SAR11 marine bacteria Brown, MV Lauro, FM DeMaere, MZ Muir, D Wilkins, D Thomas, T Riddle, MJ Furhman, JA Andrews-Pfannkoch, C Hoffman, JM McQuaid, JB Allen, A Rintoul, SR Cavicchiolo, R 2012 application/pdf https://doi.org/10.1038/msb.2012.28 http://www.ncbi.nlm.nih.gov/pubmed/22806143 http://ecite.utas.edu.au/119084 en eng Wiley-Blackwell Publishing Ltd. http://ecite.utas.edu.au/119084/1/Brown et al 2012.pdf http://dx.doi.org/10.1038/msb.2012.28 Brown, MV and Lauro, FM and DeMaere, MZ and Muir, D and Wilkins, D and Thomas, T and Riddle, MJ and Furhman, JA and Andrews-Pfannkoch, C and Hoffman, JM and McQuaid, JB and Allen, A and Rintoul, SR and Cavicchiolo, R, Global biogeography of SAR11 marine bacteria, Molecular Systems Biology, 8 Article 595. ISSN 1744-4292 (2012) [Refereed Article] http://www.ncbi.nlm.nih.gov/pubmed/22806143 http://ecite.utas.edu.au/119084 Biological Sciences Evolutionary Biology Biogeography and Phylogeography Refereed Article PeerReviewed 2012 ftunivtasecite https://doi.org/10.1038/msb.2012.28 2019-12-13T22:18:22Z The ubiquitous SAR11 bacterial clade is the most abundant type of organism in the world's oceans, but the reasons for its success are not fully elucidated. We analysed 128 surface marine metagenomes, including 37 new Antarctic metagenomes. The large size of the data set enabled internal transcribed spacer (ITS) regions to be obtained from the Southern polar region, enabling the first global characterization of the distribution of SAR11, from waters spanning temperatures −2 to 30C. Our data show a stable co‐occurrence of phylotypes within both tropical (>20C) and polar (<10C) biomes, highlighting ecological niche differentiation between major SAR11 subgroups. All phylotypes display transitions in abundance that are strongly correlated with temperature and latitude. By assembling SAR11 genomes from Antarctic metagenome data, we identified specific genes, biases in gene functions and signatures of positive selection in the genomes of the polar SAR11genomic signatures of adaptive radiation. Our data demonstrate the importance of adaptive radiation in the organism's ability to proliferate throughout the world's oceans, and describe genomic traits characteristic of different phylotypes in specific marine biomes. Article in Journal/Newspaper Antarc* Antarctic eCite UTAS (University of Tasmania) Antarctic Molecular Systems Biology 8 1 595
institution Open Polar
collection eCite UTAS (University of Tasmania)
op_collection_id ftunivtasecite
language English
topic Biological Sciences
Evolutionary Biology
Biogeography and Phylogeography
spellingShingle Biological Sciences
Evolutionary Biology
Biogeography and Phylogeography
Brown, MV
Lauro, FM
DeMaere, MZ
Muir, D
Wilkins, D
Thomas, T
Riddle, MJ
Furhman, JA
Andrews-Pfannkoch, C
Hoffman, JM
McQuaid, JB
Allen, A
Rintoul, SR
Cavicchiolo, R
Global biogeography of SAR11 marine bacteria
topic_facet Biological Sciences
Evolutionary Biology
Biogeography and Phylogeography
description The ubiquitous SAR11 bacterial clade is the most abundant type of organism in the world's oceans, but the reasons for its success are not fully elucidated. We analysed 128 surface marine metagenomes, including 37 new Antarctic metagenomes. The large size of the data set enabled internal transcribed spacer (ITS) regions to be obtained from the Southern polar region, enabling the first global characterization of the distribution of SAR11, from waters spanning temperatures −2 to 30C. Our data show a stable co‐occurrence of phylotypes within both tropical (>20C) and polar (<10C) biomes, highlighting ecological niche differentiation between major SAR11 subgroups. All phylotypes display transitions in abundance that are strongly correlated with temperature and latitude. By assembling SAR11 genomes from Antarctic metagenome data, we identified specific genes, biases in gene functions and signatures of positive selection in the genomes of the polar SAR11genomic signatures of adaptive radiation. Our data demonstrate the importance of adaptive radiation in the organism's ability to proliferate throughout the world's oceans, and describe genomic traits characteristic of different phylotypes in specific marine biomes.
format Article in Journal/Newspaper
author Brown, MV
Lauro, FM
DeMaere, MZ
Muir, D
Wilkins, D
Thomas, T
Riddle, MJ
Furhman, JA
Andrews-Pfannkoch, C
Hoffman, JM
McQuaid, JB
Allen, A
Rintoul, SR
Cavicchiolo, R
author_facet Brown, MV
Lauro, FM
DeMaere, MZ
Muir, D
Wilkins, D
Thomas, T
Riddle, MJ
Furhman, JA
Andrews-Pfannkoch, C
Hoffman, JM
McQuaid, JB
Allen, A
Rintoul, SR
Cavicchiolo, R
author_sort Brown, MV
title Global biogeography of SAR11 marine bacteria
title_short Global biogeography of SAR11 marine bacteria
title_full Global biogeography of SAR11 marine bacteria
title_fullStr Global biogeography of SAR11 marine bacteria
title_full_unstemmed Global biogeography of SAR11 marine bacteria
title_sort global biogeography of sar11 marine bacteria
publisher Wiley-Blackwell Publishing Ltd.
publishDate 2012
url https://doi.org/10.1038/msb.2012.28
http://www.ncbi.nlm.nih.gov/pubmed/22806143
http://ecite.utas.edu.au/119084
geographic Antarctic
geographic_facet Antarctic
genre Antarc*
Antarctic
genre_facet Antarc*
Antarctic
op_relation http://ecite.utas.edu.au/119084/1/Brown et al 2012.pdf
http://dx.doi.org/10.1038/msb.2012.28
Brown, MV and Lauro, FM and DeMaere, MZ and Muir, D and Wilkins, D and Thomas, T and Riddle, MJ and Furhman, JA and Andrews-Pfannkoch, C and Hoffman, JM and McQuaid, JB and Allen, A and Rintoul, SR and Cavicchiolo, R, Global biogeography of SAR11 marine bacteria, Molecular Systems Biology, 8 Article 595. ISSN 1744-4292 (2012) [Refereed Article]
http://www.ncbi.nlm.nih.gov/pubmed/22806143
http://ecite.utas.edu.au/119084
op_doi https://doi.org/10.1038/msb.2012.28
container_title Molecular Systems Biology
container_volume 8
container_issue 1
container_start_page 595
_version_ 1766250716545941504