Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes
Background DNA methylation has an important role in intergenerational inheritance. An increasing number of studies have reported evidence of germline inheritance of DNA methylation induced by nutritional signals in mammals. Vitamins and minerals as micronutrients contribute to growth performance in...
Published in: | BMC Genomics |
---|---|
Main Authors: | , , , , , , , |
Other Authors: | , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
BMC
2022
|
Subjects: | |
Online Access: | http://hdl.handle.net/1893/34006 https://doi.org/10.1186/s12864-022-08348-4 http://dspace.stir.ac.uk/retrieve/218a60c7-8f57-48f9-a088-e8a8c3f06340/Saito2022_Article_MicronutrientSupplementationAf.pdf |
id |
ftunivstirling:oai:dspace.stir.ac.uk:1893/34006 |
---|---|
record_format |
openpolar |
institution |
Open Polar |
collection |
University of Stirling: Stirling Digital Research Repository |
op_collection_id |
ftunivstirling |
language |
English |
topic |
Atlantic salmon Micronutrient Epigenetics DNA methylation Intergenerational inheritance Male germline Gonad Glutamate receptor GRIN3A HDAC2 |
spellingShingle |
Atlantic salmon Micronutrient Epigenetics DNA methylation Intergenerational inheritance Male germline Gonad Glutamate receptor GRIN3A HDAC2 Saito, Takaya Whatmore, Paul Taylor, John F Fernandes, Jorge M O Adam, Anne-Catrin Tocher, Douglas R Espe, Marit Skjaerven, Kaja H Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
topic_facet |
Atlantic salmon Micronutrient Epigenetics DNA methylation Intergenerational inheritance Male germline Gonad Glutamate receptor GRIN3A HDAC2 |
description |
Background DNA methylation has an important role in intergenerational inheritance. An increasing number of studies have reported evidence of germline inheritance of DNA methylation induced by nutritional signals in mammals. Vitamins and minerals as micronutrients contribute to growth performance in vertebrates, including Atlantic salmon (Salmo salar), and also have a role in epigenetics as environmental factors that alter DNA methylation status. It is important to understand whether micronutrients in the paternal diet can influence the offspring through alterations of DNA methylation signatures in male germ cells. Results Here, we show the effect of micronutrient supplementation on DNA methylation profiles in the male gonad through a whole life cycle feeding trial of Atlantic salmon fed three graded levels of micronutrient components. Our results strongly indicate that micronutrient supplementation affects the DNA methylation status of genes associated with cell signalling, synaptic signalling, and embryonic development. In particular, it substantially affects DNA methylation status in the promoter region of a glutamate receptor gene, glutamate receptor ionotropic, NMDA 3A-like (grin3a-like), when the fish are fed both medium and high doses of micronutrients. Furthermore, two transcription factors, histone deacetylase 2 (hdac2) and a zinc finger protein, bind to the hyper-methylated site in the grin3a-like promoter. An estimated function of hdac2 together with a zinc finger indicates that grin3a-like has a potential role in intergenerational epigenetic inheritance and the regulation of embryonic development affected by paternal diet. Conclusions The present study demonstrates alterations of gene expression patterns and DNA methylation signatures in the male gonad when Atlantic salmon are fed different levels of micronutrients. Alterations of gene expression patterns are of great interest because the gonads are supposed to have limited metabolic activities compared to other organs, whereas alterations of DNA ... |
author2 |
European Commission (Horizon 2020) Norwegian Institute of Marine Research Institute of Aquaculture Nord University orcid:0000-0003-4370-7922 orcid:0000-0002-8603-9410 |
format |
Article in Journal/Newspaper |
author |
Saito, Takaya Whatmore, Paul Taylor, John F Fernandes, Jorge M O Adam, Anne-Catrin Tocher, Douglas R Espe, Marit Skjaerven, Kaja H |
author_facet |
Saito, Takaya Whatmore, Paul Taylor, John F Fernandes, Jorge M O Adam, Anne-Catrin Tocher, Douglas R Espe, Marit Skjaerven, Kaja H |
author_sort |
Saito, Takaya |
title |
Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
title_short |
Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
title_full |
Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
title_fullStr |
Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
title_full_unstemmed |
Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
title_sort |
micronutrient supplementation affects dna methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes |
publisher |
BMC |
publishDate |
2022 |
url |
http://hdl.handle.net/1893/34006 https://doi.org/10.1186/s12864-022-08348-4 http://dspace.stir.ac.uk/retrieve/218a60c7-8f57-48f9-a088-e8a8c3f06340/Saito2022_Article_MicronutrientSupplementationAf.pdf |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
Saito T, Whatmore P, Taylor JF, Fernandes JMO, Adam A, Tocher DR, Espe M & Skjaerven KH (2022) Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes. BMC Genomics, 23 (1), Art. No.: 115. https://doi.org/10.1186/s12864-022-08348-4 ARRAINA KBBE-2001-5-288925 ARRAINA 115 http://hdl.handle.net/1893/34006 doi:10.1186/s12864-022-08348-4 35144563 WOS:000753896000005 2-s2.0-85124445991 1800509 http://dspace.stir.ac.uk/retrieve/218a60c7-8f57-48f9-a088-e8a8c3f06340/Saito2022_Article_MicronutrientSupplementationAf.pdf |
op_rights |
This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. http://creativecommons.org/licenses/by/4.0/ |
op_rightsnorm |
CC0 PDM CC-BY |
op_doi |
https://doi.org/10.1186/s12864-022-08348-4 |
container_title |
BMC Genomics |
container_volume |
23 |
container_issue |
1 |
_version_ |
1766361156799168512 |
spelling |
ftunivstirling:oai:dspace.stir.ac.uk:1893/34006 2023-05-15T15:30:42+02:00 Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes Saito, Takaya Whatmore, Paul Taylor, John F Fernandes, Jorge M O Adam, Anne-Catrin Tocher, Douglas R Espe, Marit Skjaerven, Kaja H European Commission (Horizon 2020) Norwegian Institute of Marine Research Institute of Aquaculture Nord University orcid:0000-0003-4370-7922 orcid:0000-0002-8603-9410 2022 application/pdf http://hdl.handle.net/1893/34006 https://doi.org/10.1186/s12864-022-08348-4 http://dspace.stir.ac.uk/retrieve/218a60c7-8f57-48f9-a088-e8a8c3f06340/Saito2022_Article_MicronutrientSupplementationAf.pdf en eng BMC Saito T, Whatmore P, Taylor JF, Fernandes JMO, Adam A, Tocher DR, Espe M & Skjaerven KH (2022) Micronutrient supplementation affects DNA methylation in male gonads with potential intergenerational epigenetic inheritance involving the embryonic development through glutamate receptor-associated genes. BMC Genomics, 23 (1), Art. No.: 115. https://doi.org/10.1186/s12864-022-08348-4 ARRAINA KBBE-2001-5-288925 ARRAINA 115 http://hdl.handle.net/1893/34006 doi:10.1186/s12864-022-08348-4 35144563 WOS:000753896000005 2-s2.0-85124445991 1800509 http://dspace.stir.ac.uk/retrieve/218a60c7-8f57-48f9-a088-e8a8c3f06340/Saito2022_Article_MicronutrientSupplementationAf.pdf This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. http://creativecommons.org/licenses/by/4.0/ CC0 PDM CC-BY Atlantic salmon Micronutrient Epigenetics DNA methylation Intergenerational inheritance Male germline Gonad Glutamate receptor GRIN3A HDAC2 Journal Article VoR - Version of Record 2022 ftunivstirling https://doi.org/10.1186/s12864-022-08348-4 2022-06-13T18:43:05Z Background DNA methylation has an important role in intergenerational inheritance. An increasing number of studies have reported evidence of germline inheritance of DNA methylation induced by nutritional signals in mammals. Vitamins and minerals as micronutrients contribute to growth performance in vertebrates, including Atlantic salmon (Salmo salar), and also have a role in epigenetics as environmental factors that alter DNA methylation status. It is important to understand whether micronutrients in the paternal diet can influence the offspring through alterations of DNA methylation signatures in male germ cells. Results Here, we show the effect of micronutrient supplementation on DNA methylation profiles in the male gonad through a whole life cycle feeding trial of Atlantic salmon fed three graded levels of micronutrient components. Our results strongly indicate that micronutrient supplementation affects the DNA methylation status of genes associated with cell signalling, synaptic signalling, and embryonic development. In particular, it substantially affects DNA methylation status in the promoter region of a glutamate receptor gene, glutamate receptor ionotropic, NMDA 3A-like (grin3a-like), when the fish are fed both medium and high doses of micronutrients. Furthermore, two transcription factors, histone deacetylase 2 (hdac2) and a zinc finger protein, bind to the hyper-methylated site in the grin3a-like promoter. An estimated function of hdac2 together with a zinc finger indicates that grin3a-like has a potential role in intergenerational epigenetic inheritance and the regulation of embryonic development affected by paternal diet. Conclusions The present study demonstrates alterations of gene expression patterns and DNA methylation signatures in the male gonad when Atlantic salmon are fed different levels of micronutrients. Alterations of gene expression patterns are of great interest because the gonads are supposed to have limited metabolic activities compared to other organs, whereas alterations of DNA ... Article in Journal/Newspaper Atlantic salmon Salmo salar University of Stirling: Stirling Digital Research Repository BMC Genomics 23 1 |