Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean
The widespread unicellular cyanobacteria Synechococcus are major contributors to global marine primary production. Here, we report their abundance, phylogenetic diversity (as assessed using the RNA polymerase gamma subunit gene rpoC1) and pigment diversity (as indirectly assessed using the laterally...
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ftunivsthongkong:oai:repository.ust.hk:1783.1-83859 2023-05-15T18:28:14+02:00 Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean Xia, Xiaomin Partensky, Frédéric Garczarek, Laurence Suzuki, Koji Guo, Cui Cheung, Shunyan Liu, Hongbin 2017 http://repository.ust.hk/ir/Record/1783.1-83859 https://doi.org/10.1111/1462-2920.13541 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1462-2912&rft.volume=19&rft.issue=1&rft.date=2017&rft.spage=142&rft.aulast=Xia&rft.aufirst=X.&rft.atitle=Phylogeography+and+pigment+type+diversity+of+Synechococcus+cyanobacteria+in+surface+waters+of+the+northwestern+pacific+ocean&rft.title=Environmental+microbiology http://www.scopus.com/record/display.url?eid=2-s2.0-85006469981&origin=inward http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000393587200021 English eng http://repository.ust.hk/ir/Record/1783.1-83859 Environmental Microbiology, v. 19, (1), January 2017, p. 142-158 1462-2912 1462-2920 https://doi.org/10.1111/1462-2920.13541 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1462-2912&rft.volume=19&rft.issue=1&rft.date=2017&rft.spage=142&rft.aulast=Xia&rft.aufirst=X.&rft.atitle=Phylogeography+and+pigment+type+diversity+of+Synechococcus+cyanobacteria+in+surface+waters+of+the+northwestern+pacific+ocean&rft.title=Environmental+microbiology http://www.scopus.com/record/display.url?eid=2-s2.0-85006469981&origin=inward http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000393587200021 East China Sea Marine Synechococcus Clone Libraries Article 2017 ftunivsthongkong https://doi.org/10.1111/1462-2920.13541 2019-09-03T18:20:41Z The widespread unicellular cyanobacteria Synechococcus are major contributors to global marine primary production. Here, we report their abundance, phylogenetic diversity (as assessed using the RNA polymerase gamma subunit gene rpoC1) and pigment diversity (as indirectly assessed using the laterally transferred cpeBA genes, encoding phycoerythrin-I) in surface waters of the northwestern Pacific Ocean, sampled over nine distinct cruises (2008–2015). Abundance of Synechococcus was low in the subarctic ocean and South China Sea, intermediate in the western subtropical Pacific Ocean, and the highest in the Japan and East China seas. Clades I and II were by far the most abundant Synechococcus lineages, the former dominating in temperate cold waters and the latter in (sub)tropical waters. Clades III and VI were also fairly abundant in warm waters, but with a narrower distribution than clade II. One type of chromatic acclimater (3dA) largely dominated the Synechococcus communities in the subarctic ocean, while another (3dB) and/or cells with a fixed high phycourobilin to phycoerythrobilin ratio (pigment type 3c) predominated at mid and low latitudes. Altogether, our results suggest that the variety of pigment content found in most Synechococcus clades considerably extends the niches that they can colonize and therefore the whole genus habitat. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd Article in Journal/Newspaper Subarctic The Hong Kong University of Science and Technology: HKUST Institutional Repository Pacific Environmental Microbiology 19 1 142 158 |
institution |
Open Polar |
collection |
The Hong Kong University of Science and Technology: HKUST Institutional Repository |
op_collection_id |
ftunivsthongkong |
language |
English |
topic |
East China Sea Marine Synechococcus Clone Libraries |
spellingShingle |
East China Sea Marine Synechococcus Clone Libraries Xia, Xiaomin Partensky, Frédéric Garczarek, Laurence Suzuki, Koji Guo, Cui Cheung, Shunyan Liu, Hongbin Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean |
topic_facet |
East China Sea Marine Synechococcus Clone Libraries |
description |
The widespread unicellular cyanobacteria Synechococcus are major contributors to global marine primary production. Here, we report their abundance, phylogenetic diversity (as assessed using the RNA polymerase gamma subunit gene rpoC1) and pigment diversity (as indirectly assessed using the laterally transferred cpeBA genes, encoding phycoerythrin-I) in surface waters of the northwestern Pacific Ocean, sampled over nine distinct cruises (2008–2015). Abundance of Synechococcus was low in the subarctic ocean and South China Sea, intermediate in the western subtropical Pacific Ocean, and the highest in the Japan and East China seas. Clades I and II were by far the most abundant Synechococcus lineages, the former dominating in temperate cold waters and the latter in (sub)tropical waters. Clades III and VI were also fairly abundant in warm waters, but with a narrower distribution than clade II. One type of chromatic acclimater (3dA) largely dominated the Synechococcus communities in the subarctic ocean, while another (3dB) and/or cells with a fixed high phycourobilin to phycoerythrobilin ratio (pigment type 3c) predominated at mid and low latitudes. Altogether, our results suggest that the variety of pigment content found in most Synechococcus clades considerably extends the niches that they can colonize and therefore the whole genus habitat. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd |
format |
Article in Journal/Newspaper |
author |
Xia, Xiaomin Partensky, Frédéric Garczarek, Laurence Suzuki, Koji Guo, Cui Cheung, Shunyan Liu, Hongbin |
author_facet |
Xia, Xiaomin Partensky, Frédéric Garczarek, Laurence Suzuki, Koji Guo, Cui Cheung, Shunyan Liu, Hongbin |
author_sort |
Xia, Xiaomin |
title |
Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean |
title_short |
Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean |
title_full |
Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean |
title_fullStr |
Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean |
title_full_unstemmed |
Phylogeography and Pigment Type Diversity of Synechococcus Cyanobacteria in Surface Waters of the Northwestern Pacific Ocean |
title_sort |
phylogeography and pigment type diversity of synechococcus cyanobacteria in surface waters of the northwestern pacific ocean |
publishDate |
2017 |
url |
http://repository.ust.hk/ir/Record/1783.1-83859 https://doi.org/10.1111/1462-2920.13541 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1462-2912&rft.volume=19&rft.issue=1&rft.date=2017&rft.spage=142&rft.aulast=Xia&rft.aufirst=X.&rft.atitle=Phylogeography+and+pigment+type+diversity+of+Synechococcus+cyanobacteria+in+surface+waters+of+the+northwestern+pacific+ocean&rft.title=Environmental+microbiology http://www.scopus.com/record/display.url?eid=2-s2.0-85006469981&origin=inward http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000393587200021 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Subarctic |
genre_facet |
Subarctic |
op_relation |
http://repository.ust.hk/ir/Record/1783.1-83859 Environmental Microbiology, v. 19, (1), January 2017, p. 142-158 1462-2912 1462-2920 https://doi.org/10.1111/1462-2920.13541 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1462-2912&rft.volume=19&rft.issue=1&rft.date=2017&rft.spage=142&rft.aulast=Xia&rft.aufirst=X.&rft.atitle=Phylogeography+and+pigment+type+diversity+of+Synechococcus+cyanobacteria+in+surface+waters+of+the+northwestern+pacific+ocean&rft.title=Environmental+microbiology http://www.scopus.com/record/display.url?eid=2-s2.0-85006469981&origin=inward http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000393587200021 |
op_doi |
https://doi.org/10.1111/1462-2920.13541 |
container_title |
Environmental Microbiology |
container_volume |
19 |
container_issue |
1 |
container_start_page |
142 |
op_container_end_page |
158 |
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1766210616952881152 |