A global viral oceanography database (gVOD)
Virioplankton are a key component of the marine biosphere in maintaining diversity of microorganisms and stabilizing ecosystems. They also contribute greatly to nutrient cycles/cycling by releasing organic matter after lysis of hosts. In this study, we constructed the first global viral oceanography...
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ftunivsthongkong:oai:repository.ust.hk:1783.1-110524 2023-05-15T17:35:13+02:00 A global viral oceanography database (gVOD) Xie, Le Wei, Wei Cai, Lanlan Chen, Xiaowei Huang, Yuhong Jiao, Nianzhi Zhang, Rui Luo, Ya-Wei 2021 http://repository.ust.hk/ir/Record/1783.1-110524 https://doi.org/10.5194/essd-13-1251-2021 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1866-3508&rft.volume=v. 13&rft.issue=(3)&rft.date=2021&rft.spage=1251&rft.aulast=Xie&rft.aufirst=Le&rft.atitle=A+global+viral+oceanography+database+%28gVOD%29&rft.title=EARTH+SYSTEM+SCIENCE+DATA http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000634624700003 http://www.scopus.com/record/display.url?eid=2-s2.0-85103240880&origin=inward English eng http://repository.ust.hk/ir/Record/1783.1-110524 Earth System Science Data, v. 13, (3), March 2021, p. 1251-1271 1866-3508 https://doi.org/10.5194/essd-13-1251-2021 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1866-3508&rft.volume=v. 13&rft.issue=(3)&rft.date=2021&rft.spage=1251&rft.aulast=Xie&rft.aufirst=Le&rft.atitle=A+global+viral+oceanography+database+%28gVOD%29&rft.title=EARTH+SYSTEM+SCIENCE+DATA http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000634624700003 http://www.scopus.com/record/display.url?eid=2-s2.0-85103240880&origin=inward Article 2021 ftunivsthongkong https://doi.org/10.5194/essd-13-1251-2021 2021-06-25T00:01:54Z Virioplankton are a key component of the marine biosphere in maintaining diversity of microorganisms and stabilizing ecosystems. They also contribute greatly to nutrient cycles/cycling by releasing organic matter after lysis of hosts. In this study, we constructed the first global viral oceanography database (gVOD) by collecting 10 931 viral abundance (VA) data and 727 viral production (VP) data, along with host and relevant oceanographic parameters when available. Most VA data were obtained in the North Atlantic (32 %) and North Pacific (29 %) oceans, while the southeast Pacific and Indian oceans were quite undersampled. The VA in the global ocean was 1.17(+/- 3.31) x 10(7) particles mL(-1). The lytic and lysogenic VP in the global ocean was 9.87(+/- 24.16) x 10(5) and 2.53(+/- 8.64) x 10(5) particles mL(-1) h(-1), respectively. Average VA in coastal oceans was higher than that in surface open oceans (3.61(+/- 6.30) x 10(7) versus 0.73(+/- 1.24) x 10(7) particles mL(-1)), while average VP in coastal and surface open oceans was close. Vertically, VA, lytic VP and lysogenic VP deceased from surface to deep oceans by about 1 order of magnitude. The total number of viruses in the global ocean estimated by bin-averaging and the random forest method was 1.56 x 10(30) and 1.49 x 10(30) particles, leading to an estimate of global ocean viral biomass at 35.9 and 34.4 TgC, respectively. We expect that the gVOD will be a fundamental and very useful database for laboratory, field and modeling studies in marine ecology and biogeochemistry. The full gVOD database (Xie et al., 2020) is stored in PANGAEA (https.//doi.org/10.1594/PANGAEA.915758). Article in Journal/Newspaper North Atlantic The Hong Kong University of Science and Technology: HKUST Institutional Repository Indian Pacific Earth System Science Data 13 3 1251 1271 |
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Open Polar |
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The Hong Kong University of Science and Technology: HKUST Institutional Repository |
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ftunivsthongkong |
language |
English |
description |
Virioplankton are a key component of the marine biosphere in maintaining diversity of microorganisms and stabilizing ecosystems. They also contribute greatly to nutrient cycles/cycling by releasing organic matter after lysis of hosts. In this study, we constructed the first global viral oceanography database (gVOD) by collecting 10 931 viral abundance (VA) data and 727 viral production (VP) data, along with host and relevant oceanographic parameters when available. Most VA data were obtained in the North Atlantic (32 %) and North Pacific (29 %) oceans, while the southeast Pacific and Indian oceans were quite undersampled. The VA in the global ocean was 1.17(+/- 3.31) x 10(7) particles mL(-1). The lytic and lysogenic VP in the global ocean was 9.87(+/- 24.16) x 10(5) and 2.53(+/- 8.64) x 10(5) particles mL(-1) h(-1), respectively. Average VA in coastal oceans was higher than that in surface open oceans (3.61(+/- 6.30) x 10(7) versus 0.73(+/- 1.24) x 10(7) particles mL(-1)), while average VP in coastal and surface open oceans was close. Vertically, VA, lytic VP and lysogenic VP deceased from surface to deep oceans by about 1 order of magnitude. The total number of viruses in the global ocean estimated by bin-averaging and the random forest method was 1.56 x 10(30) and 1.49 x 10(30) particles, leading to an estimate of global ocean viral biomass at 35.9 and 34.4 TgC, respectively. We expect that the gVOD will be a fundamental and very useful database for laboratory, field and modeling studies in marine ecology and biogeochemistry. The full gVOD database (Xie et al., 2020) is stored in PANGAEA (https.//doi.org/10.1594/PANGAEA.915758). |
format |
Article in Journal/Newspaper |
author |
Xie, Le Wei, Wei Cai, Lanlan Chen, Xiaowei Huang, Yuhong Jiao, Nianzhi Zhang, Rui Luo, Ya-Wei |
spellingShingle |
Xie, Le Wei, Wei Cai, Lanlan Chen, Xiaowei Huang, Yuhong Jiao, Nianzhi Zhang, Rui Luo, Ya-Wei A global viral oceanography database (gVOD) |
author_facet |
Xie, Le Wei, Wei Cai, Lanlan Chen, Xiaowei Huang, Yuhong Jiao, Nianzhi Zhang, Rui Luo, Ya-Wei |
author_sort |
Xie, Le |
title |
A global viral oceanography database (gVOD) |
title_short |
A global viral oceanography database (gVOD) |
title_full |
A global viral oceanography database (gVOD) |
title_fullStr |
A global viral oceanography database (gVOD) |
title_full_unstemmed |
A global viral oceanography database (gVOD) |
title_sort |
global viral oceanography database (gvod) |
publishDate |
2021 |
url |
http://repository.ust.hk/ir/Record/1783.1-110524 https://doi.org/10.5194/essd-13-1251-2021 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1866-3508&rft.volume=v. 13&rft.issue=(3)&rft.date=2021&rft.spage=1251&rft.aulast=Xie&rft.aufirst=Le&rft.atitle=A+global+viral+oceanography+database+%28gVOD%29&rft.title=EARTH+SYSTEM+SCIENCE+DATA http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000634624700003 http://www.scopus.com/record/display.url?eid=2-s2.0-85103240880&origin=inward |
geographic |
Indian Pacific |
geographic_facet |
Indian Pacific |
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North Atlantic |
genre_facet |
North Atlantic |
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http://repository.ust.hk/ir/Record/1783.1-110524 Earth System Science Data, v. 13, (3), March 2021, p. 1251-1271 1866-3508 https://doi.org/10.5194/essd-13-1251-2021 http://lbdiscover.ust.hk/uresolver?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rfr_id=info:sid/HKUST:SPI&rft.genre=article&rft.issn=1866-3508&rft.volume=v. 13&rft.issue=(3)&rft.date=2021&rft.spage=1251&rft.aulast=Xie&rft.aufirst=Le&rft.atitle=A+global+viral+oceanography+database+%28gVOD%29&rft.title=EARTH+SYSTEM+SCIENCE+DATA http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=LinksAMR&SrcApp=PARTNER_APP&DestLinkType=FullRecord&DestApp=WOS&KeyUT=000634624700003 http://www.scopus.com/record/display.url?eid=2-s2.0-85103240880&origin=inward |
op_doi |
https://doi.org/10.5194/essd-13-1251-2021 |
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Earth System Science Data |
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13 |
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3 |
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1271 |
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1766134300713943040 |