Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins
The dissection of phylogenetic and environmental components in biological evolution is one of the main themes of general biology. Here we propose an approach to this theme relying upon the comparison between a phylogenetic oriented metrics spanning the hemoglobin β chains of different fishes and a m...
Published in: | OMICS: A Journal of Integrative Biology |
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Format: | Article in Journal/Newspaper |
Language: | English |
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Larchmont, NY: Mary Ann Liebert.
2010
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Online Access: | http://hdl.handle.net/11573/24793 https://doi.org/10.1089/omi.2010.0007 http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=000279046800006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=0c7ff228ccbaaa74236f48834a34396a http://www.scopus.com/inward/record.url?eid=2-s2.0-77954200946&partnerID=65&md5=96c1c3da1360adc6ac4b3c7255fb8c28 |
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ftunivromairis:oai:iris.uniroma1.it:11573/24793 2024-04-21T07:56:41+00:00 Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins Mauro Colafranceschi Alessandro Giuliani Øivind Andersen Ole Brix Maria Cristina De Rosa Bruno Giardina COLOSIMO, Alfredo Mauro, Colafranceschi Alessandro, Giuliani Øivind, Andersen Ole, Brix Maria Cristina De, Rosa Bruno, Giardina Colosimo, Alfredo 2010 STAMPA http://hdl.handle.net/11573/24793 https://doi.org/10.1089/omi.2010.0007 http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=000279046800006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=0c7ff228ccbaaa74236f48834a34396a http://www.scopus.com/inward/record.url?eid=2-s2.0-77954200946&partnerID=65&md5=96c1c3da1360adc6ac4b3c7255fb8c28 eng eng Larchmont, NY: Mary Ann Liebert. info:eu-repo/semantics/altIdentifier/pmid/20450440 info:eu-repo/semantics/altIdentifier/wos/WOS:000279046800006 volume:14 issue:3 firstpage:275 lastpage:281 numberofpages:7 journal:OMICS http://hdl.handle.net/11573/24793 doi:10.1089/omi.2010.0007 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-77954200946 http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=000279046800006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=0c7ff228ccbaaa74236f48834a34396a http://www.scopus.com/inward/record.url?eid=2-s2.0-77954200946&partnerID=65&md5=96c1c3da1360adc6ac4b3c7255fb8c28 molecular structure protein folding protein structure info:eu-repo/semantics/article 2010 ftunivromairis https://doi.org/10.1089/omi.2010.0007 2024-03-28T01:58:09Z The dissection of phylogenetic and environmental components in biological evolution is one of the main themes of general biology. Here we propose an approach to this theme relying upon the comparison between a phylogenetic oriented metrics spanning the hemoglobin β chains of different fishes and a more physiologically oriented metrics defining the same sequences in terms of the dynamical features of their hydrophobic distributions. By analyzing the set of sequences more similar to the Gadus morhua (Atlantic cod) hemoglobin β chain, we were able to give a proof of concept of the possibility to discriminate the phylogenetic and environmental (evolutive convergence) components by the comparative analysis of the Clustal W (phylogenetics first) and Recurrence Quantification Analysis (physiology first) metrics in which the sequences were embedded. The use of a molecular system like hemoglobin playing a crucial role in fishes adaptation to environmental cues allowed us to span different levels of biological variability by means of the same paradigm. Starting from the reconstruction of the general taxonomy of vertebrate groups we went down to the exploitation of the peculiar role played by Met55Val and Lys62Ala polymorphisms in the β1 hemoglobin chain of the Atlantic cod able to influence the geographical distribution of its various stocks. © Copyright 2010, Mary Ann Liebert, Inc. Article in Journal/Newspaper atlantic cod Gadus morhua Sapienza Università di Roma: CINECA IRIS OMICS: A Journal of Integrative Biology 14 3 275 281 |
institution |
Open Polar |
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Sapienza Università di Roma: CINECA IRIS |
op_collection_id |
ftunivromairis |
language |
English |
topic |
molecular structure protein folding protein structure |
spellingShingle |
molecular structure protein folding protein structure Mauro Colafranceschi Alessandro Giuliani Øivind Andersen Ole Brix Maria Cristina De Rosa Bruno Giardina COLOSIMO, Alfredo Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins |
topic_facet |
molecular structure protein folding protein structure |
description |
The dissection of phylogenetic and environmental components in biological evolution is one of the main themes of general biology. Here we propose an approach to this theme relying upon the comparison between a phylogenetic oriented metrics spanning the hemoglobin β chains of different fishes and a more physiologically oriented metrics defining the same sequences in terms of the dynamical features of their hydrophobic distributions. By analyzing the set of sequences more similar to the Gadus morhua (Atlantic cod) hemoglobin β chain, we were able to give a proof of concept of the possibility to discriminate the phylogenetic and environmental (evolutive convergence) components by the comparative analysis of the Clustal W (phylogenetics first) and Recurrence Quantification Analysis (physiology first) metrics in which the sequences were embedded. The use of a molecular system like hemoglobin playing a crucial role in fishes adaptation to environmental cues allowed us to span different levels of biological variability by means of the same paradigm. Starting from the reconstruction of the general taxonomy of vertebrate groups we went down to the exploitation of the peculiar role played by Met55Val and Lys62Ala polymorphisms in the β1 hemoglobin chain of the Atlantic cod able to influence the geographical distribution of its various stocks. © Copyright 2010, Mary Ann Liebert, Inc. |
author2 |
Mauro, Colafranceschi Alessandro, Giuliani Øivind, Andersen Ole, Brix Maria Cristina De, Rosa Bruno, Giardina Colosimo, Alfredo |
format |
Article in Journal/Newspaper |
author |
Mauro Colafranceschi Alessandro Giuliani Øivind Andersen Ole Brix Maria Cristina De Rosa Bruno Giardina COLOSIMO, Alfredo |
author_facet |
Mauro Colafranceschi Alessandro Giuliani Øivind Andersen Ole Brix Maria Cristina De Rosa Bruno Giardina COLOSIMO, Alfredo |
author_sort |
Mauro Colafranceschi |
title |
Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins |
title_short |
Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins |
title_full |
Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins |
title_fullStr |
Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins |
title_full_unstemmed |
Hydrophobicity patterns and biological adaptation: An exemplary case from fish hemoglobins |
title_sort |
hydrophobicity patterns and biological adaptation: an exemplary case from fish hemoglobins |
publisher |
Larchmont, NY: Mary Ann Liebert. |
publishDate |
2010 |
url |
http://hdl.handle.net/11573/24793 https://doi.org/10.1089/omi.2010.0007 http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=000279046800006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=0c7ff228ccbaaa74236f48834a34396a http://www.scopus.com/inward/record.url?eid=2-s2.0-77954200946&partnerID=65&md5=96c1c3da1360adc6ac4b3c7255fb8c28 |
genre |
atlantic cod Gadus morhua |
genre_facet |
atlantic cod Gadus morhua |
op_relation |
info:eu-repo/semantics/altIdentifier/pmid/20450440 info:eu-repo/semantics/altIdentifier/wos/WOS:000279046800006 volume:14 issue:3 firstpage:275 lastpage:281 numberofpages:7 journal:OMICS http://hdl.handle.net/11573/24793 doi:10.1089/omi.2010.0007 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-77954200946 http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=000279046800006&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=0c7ff228ccbaaa74236f48834a34396a http://www.scopus.com/inward/record.url?eid=2-s2.0-77954200946&partnerID=65&md5=96c1c3da1360adc6ac4b3c7255fb8c28 |
op_doi |
https://doi.org/10.1089/omi.2010.0007 |
container_title |
OMICS: A Journal of Integrative Biology |
container_volume |
14 |
container_issue |
3 |
container_start_page |
275 |
op_container_end_page |
281 |
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1796938602230317056 |