De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites
Understanding the genomic underpinnings of thermal adaptation is a hot topic in eco-evolutionary studies of parasites. Marine heteroxenous parasites have complex life cycles encompassing a free-living larval stage, an ectothermic intermediate host and a homeothermic definitive host, thus representin...
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ftunivromairis:oai:iris.uniroma1.it:11573/1709191 2024-05-19T07:32:36+00:00 De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites Palomba, Marialetizia Libro, Pietro Di Martino, Jessica Roca-Geronès, Xavier Macali, Armando Castrignanò, Tiziana Canestrelli, Daniele Mattiucci, Simonetta Palomba, Marialetizia Libro, Pietro Di Martino, Jessica Roca-Geronès, Xavier Macali, Armando Castrignanò, Tiziana Canestrelli, Daniele Mattiucci, Simonetta 2023 https://hdl.handle.net/11573/1709191 https://doi.org/10.1038/s41597-023-02591-4 eng eng NATURE PORTFOLIO place:HEIDELBERGER PLATZ 3, BERLIN, 14197, GERMANY info:eu-repo/semantics/altIdentifier/pmid/37857654 info:eu-repo/semantics/altIdentifier/wos/WOS:001097405100004 volume:10 issue:1 lastpage:1 numberofpages:10 journal:SCIENTIFIC DATA https://hdl.handle.net/11573/1709191 doi:10.1038/s41597-023-02591-4 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85174425104 info:eu-repo/semantics/openAccess antarctic anisakid contracaecum osculatum transcriptomic thermal adaptation info:eu-repo/semantics/article 2023 ftunivromairis https://doi.org/10.1038/s41597-023-02591-4 2024-05-02T00:02:35Z Understanding the genomic underpinnings of thermal adaptation is a hot topic in eco-evolutionary studies of parasites. Marine heteroxenous parasites have complex life cycles encompassing a free-living larval stage, an ectothermic intermediate host and a homeothermic definitive host, thus representing compelling systems for the study of thermal adaptation. The Antarctic anisakid Contracaecum osculatum sp. D is a marine parasite able to survive and thrive both at very cold and warm temperatures within the environment and its hosts. Here, a de novo transcriptome of C. osculatum sp. D was generated for the first time, by performing RNA-Seq experiments on a set of individuals exposed to temperatures experienced by the nematode during its life cycle. The analysis generated 425,954,724 reads, which were assembled and then annotated. The high-quality assembly was validated, achieving over 88% mapping against the transcriptome. The transcriptome of this parasite will represent a valuable genomic resource for future studies aimed at disentangling the genomic architecture of thermal tolerance and metabolic pathways related to temperature stress. Article in Journal/Newspaper Antarc* Antarctic Sapienza Università di Roma: CINECA IRIS Scientific Data 10 1 |
institution |
Open Polar |
collection |
Sapienza Università di Roma: CINECA IRIS |
op_collection_id |
ftunivromairis |
language |
English |
topic |
antarctic anisakid contracaecum osculatum transcriptomic thermal adaptation |
spellingShingle |
antarctic anisakid contracaecum osculatum transcriptomic thermal adaptation Palomba, Marialetizia Libro, Pietro Di Martino, Jessica Roca-Geronès, Xavier Macali, Armando Castrignanò, Tiziana Canestrelli, Daniele Mattiucci, Simonetta De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
topic_facet |
antarctic anisakid contracaecum osculatum transcriptomic thermal adaptation |
description |
Understanding the genomic underpinnings of thermal adaptation is a hot topic in eco-evolutionary studies of parasites. Marine heteroxenous parasites have complex life cycles encompassing a free-living larval stage, an ectothermic intermediate host and a homeothermic definitive host, thus representing compelling systems for the study of thermal adaptation. The Antarctic anisakid Contracaecum osculatum sp. D is a marine parasite able to survive and thrive both at very cold and warm temperatures within the environment and its hosts. Here, a de novo transcriptome of C. osculatum sp. D was generated for the first time, by performing RNA-Seq experiments on a set of individuals exposed to temperatures experienced by the nematode during its life cycle. The analysis generated 425,954,724 reads, which were assembled and then annotated. The high-quality assembly was validated, achieving over 88% mapping against the transcriptome. The transcriptome of this parasite will represent a valuable genomic resource for future studies aimed at disentangling the genomic architecture of thermal tolerance and metabolic pathways related to temperature stress. |
author2 |
Palomba, Marialetizia Libro, Pietro Di Martino, Jessica Roca-Geronès, Xavier Macali, Armando Castrignanò, Tiziana Canestrelli, Daniele Mattiucci, Simonetta |
format |
Article in Journal/Newspaper |
author |
Palomba, Marialetizia Libro, Pietro Di Martino, Jessica Roca-Geronès, Xavier Macali, Armando Castrignanò, Tiziana Canestrelli, Daniele Mattiucci, Simonetta |
author_facet |
Palomba, Marialetizia Libro, Pietro Di Martino, Jessica Roca-Geronès, Xavier Macali, Armando Castrignanò, Tiziana Canestrelli, Daniele Mattiucci, Simonetta |
author_sort |
Palomba, Marialetizia |
title |
De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
title_short |
De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
title_full |
De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
title_fullStr |
De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
title_full_unstemmed |
De novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
title_sort |
de novo transcriptome assembly of an antarctic nematode for the study of thermal adaptation in marine parasites |
publisher |
NATURE PORTFOLIO |
publishDate |
2023 |
url |
https://hdl.handle.net/11573/1709191 https://doi.org/10.1038/s41597-023-02591-4 |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
info:eu-repo/semantics/altIdentifier/pmid/37857654 info:eu-repo/semantics/altIdentifier/wos/WOS:001097405100004 volume:10 issue:1 lastpage:1 numberofpages:10 journal:SCIENTIFIC DATA https://hdl.handle.net/11573/1709191 doi:10.1038/s41597-023-02591-4 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85174425104 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1038/s41597-023-02591-4 |
container_title |
Scientific Data |
container_volume |
10 |
container_issue |
1 |
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1799470723551461376 |