Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales
Recent discoveries of mcr and mcr‐like complexes in genomes from diverse archaeal lineages suggest that methane metabolism is an ancient pathway with a complicated evolutionary history. One conventional view is that methanogenesis is an ancestral metabolism of the class Thermoplasmata. Through compa...
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ftunivqespace:oai:espace.library.uq.edu.au:UQ:ea8e32f 2023-05-15T18:28:27+02:00 Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales Zinke, Laura A. Evans, Paul N. Santos-Medellín, Christian Schroeder, Alena L. Parks, Donovan H. Varner, Ruth K. Rich, Virginia I. Tyson, Gene W. Emerson, Joanne B. 2020-11-13 https://espace.library.uq.edu.au/view/UQ:ea8e32f eng eng Wiley-Blackwell Publishing doi:10.1111/1462-2920.15316 issn:1462-2920 issn:1462-2912 orcid:0000-0001-5995-2602 orcid:0000-0001-8559-9427 1063037 Not set DE-SC0010580 DE-SC0016440 DE-SC0020163 Ecology Evolution Behavior and Systematics Microbiology 1105 Ecology 2404 Microbiology Journal Article 2020 ftunivqespace https://doi.org/10.1111/1462-2920.15316 2020-12-29T01:42:50Z Recent discoveries of mcr and mcr‐like complexes in genomes from diverse archaeal lineages suggest that methane metabolism is an ancient pathway with a complicated evolutionary history. One conventional view is that methanogenesis is an ancestral metabolism of the class Thermoplasmata. Through comparative genomic analysis of 12 Thermoplasmata metagenome‐assembled genomes (MAGs) basal to the Methanomassiliicoccales, we show that these microorganisms do not encode the genes required for methanogenesis. Further analysis of 770 Ca. Thermoplasmatota genomes/MAGs found no McrA homologs outside of the Methanomassiliicoccales. Together, these results suggest that methanogenesis was laterally acquired by an ancestor of the Methanomassiliicoccales. The 12 analyzed MAGs include representatives from four orders basal to the Methanomassiliicoccales, including a high‐quality MAG that likely represents a new order, Ca. Lunaplasma lacustris ord. nov. sp. nov. These MAGs are predicted to use diverse energy conservation pathways, including heterotrophy, sulfur and hydrogen metabolism, denitrification, and fermentation. Two lineages are widespread among anoxic, sedimentary environments, whereas Ca. Lunaplasma lacustris has thus far only been detected in alpine caves and subarctic lake sediments. These findings advance our understanding of the metabolic potential, ecology, and global distribution of the Thermoplasmata and provide insight into the evolutionary history of methanogenesis within the Ca. Thermoplasmatota. Article in Journal/Newspaper Subarctic The University of Queensland: UQ eSpace Environmental Microbiology 23 1 340 357 |
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Open Polar |
collection |
The University of Queensland: UQ eSpace |
op_collection_id |
ftunivqespace |
language |
English |
topic |
Ecology Evolution Behavior and Systematics Microbiology 1105 Ecology 2404 Microbiology |
spellingShingle |
Ecology Evolution Behavior and Systematics Microbiology 1105 Ecology 2404 Microbiology Zinke, Laura A. Evans, Paul N. Santos-Medellín, Christian Schroeder, Alena L. Parks, Donovan H. Varner, Ruth K. Rich, Virginia I. Tyson, Gene W. Emerson, Joanne B. Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales |
topic_facet |
Ecology Evolution Behavior and Systematics Microbiology 1105 Ecology 2404 Microbiology |
description |
Recent discoveries of mcr and mcr‐like complexes in genomes from diverse archaeal lineages suggest that methane metabolism is an ancient pathway with a complicated evolutionary history. One conventional view is that methanogenesis is an ancestral metabolism of the class Thermoplasmata. Through comparative genomic analysis of 12 Thermoplasmata metagenome‐assembled genomes (MAGs) basal to the Methanomassiliicoccales, we show that these microorganisms do not encode the genes required for methanogenesis. Further analysis of 770 Ca. Thermoplasmatota genomes/MAGs found no McrA homologs outside of the Methanomassiliicoccales. Together, these results suggest that methanogenesis was laterally acquired by an ancestor of the Methanomassiliicoccales. The 12 analyzed MAGs include representatives from four orders basal to the Methanomassiliicoccales, including a high‐quality MAG that likely represents a new order, Ca. Lunaplasma lacustris ord. nov. sp. nov. These MAGs are predicted to use diverse energy conservation pathways, including heterotrophy, sulfur and hydrogen metabolism, denitrification, and fermentation. Two lineages are widespread among anoxic, sedimentary environments, whereas Ca. Lunaplasma lacustris has thus far only been detected in alpine caves and subarctic lake sediments. These findings advance our understanding of the metabolic potential, ecology, and global distribution of the Thermoplasmata and provide insight into the evolutionary history of methanogenesis within the Ca. Thermoplasmatota. |
format |
Article in Journal/Newspaper |
author |
Zinke, Laura A. Evans, Paul N. Santos-Medellín, Christian Schroeder, Alena L. Parks, Donovan H. Varner, Ruth K. Rich, Virginia I. Tyson, Gene W. Emerson, Joanne B. |
author_facet |
Zinke, Laura A. Evans, Paul N. Santos-Medellín, Christian Schroeder, Alena L. Parks, Donovan H. Varner, Ruth K. Rich, Virginia I. Tyson, Gene W. Emerson, Joanne B. |
author_sort |
Zinke, Laura A. |
title |
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales |
title_short |
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales |
title_full |
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales |
title_fullStr |
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales |
title_full_unstemmed |
Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales |
title_sort |
evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the methanomassiliicoccales |
publisher |
Wiley-Blackwell Publishing |
publishDate |
2020 |
url |
https://espace.library.uq.edu.au/view/UQ:ea8e32f |
genre |
Subarctic |
genre_facet |
Subarctic |
op_relation |
doi:10.1111/1462-2920.15316 issn:1462-2920 issn:1462-2912 orcid:0000-0001-5995-2602 orcid:0000-0001-8559-9427 1063037 Not set DE-SC0010580 DE-SC0016440 DE-SC0020163 |
op_doi |
https://doi.org/10.1111/1462-2920.15316 |
container_title |
Environmental Microbiology |
container_volume |
23 |
container_issue |
1 |
container_start_page |
340 |
op_container_end_page |
357 |
_version_ |
1766210932930772992 |