Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov
The phylum Caldiserica was identified from the hot spring 16S rRNA gene lineage ‘OP5’ and named for the sole isolate Caldisericum exile, a hot spring sulfur-reducing chemoheterotroph. Here we characterize 7 Caldiserica metagenome-assembled genomes (MAGs) from a thawing permafrost site in Stordalen M...
Published in: | Systematic and Applied Microbiology |
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Format: | Article in Journal/Newspaper |
Language: | English |
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2019
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Online Access: | https://espace.library.uq.edu.au/view/UQ:4528a18 |
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ftunivqespace:oai:espace.library.uq.edu.au:UQ:4528a18 2023-05-15T15:15:36+02:00 Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov Martinez, Miguel A. Woodcroft, Ben J. Ignacio Espinoza, Julio C. Zayed, Ahmed A. Singleton, Caitlin M. Boyd, Joel A. Li, Yueh-Fen Purvine, Samuel Maughan, Heather Hodgkins, Suzanne B. Anderson, Darya Sederholm, Maya Temperton, Ben Bolduc, Benjamin Saleska, Scott R. Tyson, Gene W. Rich, Virginia I. 2019-01-01 https://espace.library.uq.edu.au/view/UQ:4528a18 eng eng Elsevier doi:10.1016/j.syapm.2018.12.003 issn:1618-0984 issn:0723-2020 orcid:0000-0003-0670-7480 orcid:0000-0001-9688-8208 orcid:0000-0003-0834-2374 orcid:0000-0001-8559-9427 DE-5C0004632 DE-5C0010580 DE-5C0016440 DE-AC02-05CH11231 DE-AC05-76RL01830 Ca. Cryosericota Ca. Cryosericum Caldiserica Metagenome-assembled genome Permafrost Stordalen Mire 1105 Ecology Evolution Behavior and Systematics 2402 Applied Microbiology and Biotechnology 2404 Microbiology Journal Article 2019 ftunivqespace https://doi.org/10.1016/j.syapm.2018.12.003 2020-12-29T00:59:04Z The phylum Caldiserica was identified from the hot spring 16S rRNA gene lineage ‘OP5’ and named for the sole isolate Caldisericum exile, a hot spring sulfur-reducing chemoheterotroph. Here we characterize 7 Caldiserica metagenome-assembled genomes (MAGs) from a thawing permafrost site in Stordalen Mire, Arctic Sweden. By 16S rRNA and marker gene phylogenies, and average nucleotide and amino acid identities, these Stordalen Mire Caldiserica (SMC) MAGs form part of a divergent clade from C. exile. Genome and meta-transcriptome and proteome analyses suggest that unlike Caldisericum, the SMCs (i) are carbohydrate- and possibly amino acid fermenters that can use labile plant compounds and peptides, and (ii) encode adaptations to low temperature. The SMC clade rose to community dominance within permafrost, with a peak metagenome-based relative abundance of ∼60%. It was also physiologically active in the upper seasonally-thawed soil. Beyond Stordalen Mire, analysis of 16S rRNA gene surveys indicated a global distribution of this clade, predominantly in anaerobic, carbon-rich and cold environments. These findings establish the SMCs as four novel phenotypically and ecologically distinct species within a single novel genus, distinct from C. exile clade at the phylum level. The SMCs are thus part of a novel cold-habitat phylum for an understudied, globally-distributed superphylum encompassing the Caldiserica. We propose the names Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., Ca. Cryosericum gen. nov., Ca. Cryosericum septentrionale sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., and Ca. C. terrychapinii sp. nov. Article in Journal/Newspaper Arctic permafrost The University of Queensland: UQ eSpace Arctic Stordalen ENVELOPE(7.337,7.337,62.510,62.510) Systematic and Applied Microbiology 42 1 54 66 |
institution |
Open Polar |
collection |
The University of Queensland: UQ eSpace |
op_collection_id |
ftunivqespace |
language |
English |
topic |
Ca. Cryosericota Ca. Cryosericum Caldiserica Metagenome-assembled genome Permafrost Stordalen Mire 1105 Ecology Evolution Behavior and Systematics 2402 Applied Microbiology and Biotechnology 2404 Microbiology |
spellingShingle |
Ca. Cryosericota Ca. Cryosericum Caldiserica Metagenome-assembled genome Permafrost Stordalen Mire 1105 Ecology Evolution Behavior and Systematics 2402 Applied Microbiology and Biotechnology 2404 Microbiology Martinez, Miguel A. Woodcroft, Ben J. Ignacio Espinoza, Julio C. Zayed, Ahmed A. Singleton, Caitlin M. Boyd, Joel A. Li, Yueh-Fen Purvine, Samuel Maughan, Heather Hodgkins, Suzanne B. Anderson, Darya Sederholm, Maya Temperton, Ben Bolduc, Benjamin Saleska, Scott R. Tyson, Gene W. Rich, Virginia I. Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov |
topic_facet |
Ca. Cryosericota Ca. Cryosericum Caldiserica Metagenome-assembled genome Permafrost Stordalen Mire 1105 Ecology Evolution Behavior and Systematics 2402 Applied Microbiology and Biotechnology 2404 Microbiology |
description |
The phylum Caldiserica was identified from the hot spring 16S rRNA gene lineage ‘OP5’ and named for the sole isolate Caldisericum exile, a hot spring sulfur-reducing chemoheterotroph. Here we characterize 7 Caldiserica metagenome-assembled genomes (MAGs) from a thawing permafrost site in Stordalen Mire, Arctic Sweden. By 16S rRNA and marker gene phylogenies, and average nucleotide and amino acid identities, these Stordalen Mire Caldiserica (SMC) MAGs form part of a divergent clade from C. exile. Genome and meta-transcriptome and proteome analyses suggest that unlike Caldisericum, the SMCs (i) are carbohydrate- and possibly amino acid fermenters that can use labile plant compounds and peptides, and (ii) encode adaptations to low temperature. The SMC clade rose to community dominance within permafrost, with a peak metagenome-based relative abundance of ∼60%. It was also physiologically active in the upper seasonally-thawed soil. Beyond Stordalen Mire, analysis of 16S rRNA gene surveys indicated a global distribution of this clade, predominantly in anaerobic, carbon-rich and cold environments. These findings establish the SMCs as four novel phenotypically and ecologically distinct species within a single novel genus, distinct from C. exile clade at the phylum level. The SMCs are thus part of a novel cold-habitat phylum for an understudied, globally-distributed superphylum encompassing the Caldiserica. We propose the names Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., Ca. Cryosericum gen. nov., Ca. Cryosericum septentrionale sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., and Ca. C. terrychapinii sp. nov. |
format |
Article in Journal/Newspaper |
author |
Martinez, Miguel A. Woodcroft, Ben J. Ignacio Espinoza, Julio C. Zayed, Ahmed A. Singleton, Caitlin M. Boyd, Joel A. Li, Yueh-Fen Purvine, Samuel Maughan, Heather Hodgkins, Suzanne B. Anderson, Darya Sederholm, Maya Temperton, Ben Bolduc, Benjamin Saleska, Scott R. Tyson, Gene W. Rich, Virginia I. |
author_facet |
Martinez, Miguel A. Woodcroft, Ben J. Ignacio Espinoza, Julio C. Zayed, Ahmed A. Singleton, Caitlin M. Boyd, Joel A. Li, Yueh-Fen Purvine, Samuel Maughan, Heather Hodgkins, Suzanne B. Anderson, Darya Sederholm, Maya Temperton, Ben Bolduc, Benjamin Saleska, Scott R. Tyson, Gene W. Rich, Virginia I. |
author_sort |
Martinez, Miguel A. |
title |
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov |
title_short |
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov |
title_full |
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov |
title_fullStr |
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov |
title_full_unstemmed |
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov |
title_sort |
discovery and ecogenomic context of a global caldiserica-related phylum active in thawing permafrost, candidatus cryosericota phylum nov., ca. cryosericia class nov., ca. cryosericales ord. nov., ca. cryosericaceae fam. nov., comprising the four species cryosericum septentrionale gen. nov. sp. nov., ca. c. hinesii sp. nov., ca. c. odellii sp. nov., ca. c. terrychapinii sp. nov |
publisher |
Elsevier |
publishDate |
2019 |
url |
https://espace.library.uq.edu.au/view/UQ:4528a18 |
long_lat |
ENVELOPE(7.337,7.337,62.510,62.510) |
geographic |
Arctic Stordalen |
geographic_facet |
Arctic Stordalen |
genre |
Arctic permafrost |
genre_facet |
Arctic permafrost |
op_relation |
doi:10.1016/j.syapm.2018.12.003 issn:1618-0984 issn:0723-2020 orcid:0000-0003-0670-7480 orcid:0000-0001-9688-8208 orcid:0000-0003-0834-2374 orcid:0000-0001-8559-9427 DE-5C0004632 DE-5C0010580 DE-5C0016440 DE-AC02-05CH11231 DE-AC05-76RL01830 |
op_doi |
https://doi.org/10.1016/j.syapm.2018.12.003 |
container_title |
Systematic and Applied Microbiology |
container_volume |
42 |
container_issue |
1 |
container_start_page |
54 |
op_container_end_page |
66 |
_version_ |
1766345963715166208 |