Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface

This dissertation consists of two independent parts: Part I. methane hydrate, and Part II. water loading on a clay surface. In Part I (chapter 2-3), we conducted molecular dynamics simulations with non-polarizable force fields to study structural and thermal properties of methane hydrate. We show th...

Full description

Bibliographic Details
Main Author: Zhang, Guozhen
Format: Thesis
Language:English
Published: 2012
Subjects:
Online Access:http://d-scholarship.pitt.edu/13633/
http://d-scholarship.pitt.edu/13633/1/ETD_zgz.v2.pdf
id ftunivpittsburgh:oai:d-scholarship.pitt.edu:13633
record_format openpolar
spelling ftunivpittsburgh:oai:d-scholarship.pitt.edu:13633 2023-09-05T13:21:06+02:00 Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface Zhang, Guozhen 2012-10-09 application/pdf http://d-scholarship.pitt.edu/13633/ http://d-scholarship.pitt.edu/13633/1/ETD_zgz.v2.pdf en eng http://d-scholarship.pitt.edu/13633/1/ETD_zgz.v2.pdf Zhang, Guozhen (2012) Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface. Doctoral Dissertation, University of Pittsburgh. (Unpublished) University of Pittsburgh ETD PeerReviewed 2012 ftunivpittsburgh 2023-08-14T17:31:08Z This dissertation consists of two independent parts: Part I. methane hydrate, and Part II. water loading on a clay surface. In Part I (chapter 2-3), we conducted molecular dynamics simulations with non-polarizable force fields to study structural and thermal properties of methane hydrate. We show that the TIP4P/Ice and TIP4P/2005 model potentials do well in the description of the lattice constant and radial distribution functions. Yet they, together with SPC/E and TIP4P models, overestimate the thermal expansion coefficient due to the inadequate description of the non-linear response of lattice constant to temperature. We also show that TIP4P/Ice and TIP4P/2005 overestimate the decomposition temperature of methane hydrate from the experimental value by 50 K and 30 K respectively, while SPC/E gives a good estimation deviating by about 5 K. All these force fields are found to overestimate the thermal conductivity of methane hydrate, but they are able to describe the weak temperature dependence from 100 to 150 K and 225 to 270 K. It is also found that all initial structures used in the work have a proton ordering tendency, suggesting a potential role of proton arrangement in the temperature dependence of the thermal conductivity. In part II (chapter 4), we conducted dispersion-corrected density function theory (DFT-D) and classical force field calculations to study the water loading on a pyrophyllite (001) surface. We disclose low-energy binding motifs from one water molecule to six water molecules and reinterpret the hydrophobic nature of the pyrophyllite surface from the point of view that a water molecule prefers to interact with other water molecules than to be bound on the surface. The force field approach, while providing a similar trend of the water binding to the DFT-D result, predicts some low-energy binding motifs which are not confirmed by the DFT-D calculation. It suggests a refinement of the force field to better describe the interfacial orientation of water on a clay surface. Thesis Methane hydrate University of Pittsburgh: D-Scholarship@Pitt
institution Open Polar
collection University of Pittsburgh: D-Scholarship@Pitt
op_collection_id ftunivpittsburgh
language English
description This dissertation consists of two independent parts: Part I. methane hydrate, and Part II. water loading on a clay surface. In Part I (chapter 2-3), we conducted molecular dynamics simulations with non-polarizable force fields to study structural and thermal properties of methane hydrate. We show that the TIP4P/Ice and TIP4P/2005 model potentials do well in the description of the lattice constant and radial distribution functions. Yet they, together with SPC/E and TIP4P models, overestimate the thermal expansion coefficient due to the inadequate description of the non-linear response of lattice constant to temperature. We also show that TIP4P/Ice and TIP4P/2005 overestimate the decomposition temperature of methane hydrate from the experimental value by 50 K and 30 K respectively, while SPC/E gives a good estimation deviating by about 5 K. All these force fields are found to overestimate the thermal conductivity of methane hydrate, but they are able to describe the weak temperature dependence from 100 to 150 K and 225 to 270 K. It is also found that all initial structures used in the work have a proton ordering tendency, suggesting a potential role of proton arrangement in the temperature dependence of the thermal conductivity. In part II (chapter 4), we conducted dispersion-corrected density function theory (DFT-D) and classical force field calculations to study the water loading on a pyrophyllite (001) surface. We disclose low-energy binding motifs from one water molecule to six water molecules and reinterpret the hydrophobic nature of the pyrophyllite surface from the point of view that a water molecule prefers to interact with other water molecules than to be bound on the surface. The force field approach, while providing a similar trend of the water binding to the DFT-D result, predicts some low-energy binding motifs which are not confirmed by the DFT-D calculation. It suggests a refinement of the force field to better describe the interfacial orientation of water on a clay surface.
format Thesis
author Zhang, Guozhen
spellingShingle Zhang, Guozhen
Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface
author_facet Zhang, Guozhen
author_sort Zhang, Guozhen
title Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface
title_short Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface
title_full Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface
title_fullStr Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface
title_full_unstemmed Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface
title_sort computational studies of chemical systems: i. a molecular dynamics simulation of methane hydrate; ii. theoretical investigation of water loading on a pyrophyllite (001) surface
publishDate 2012
url http://d-scholarship.pitt.edu/13633/
http://d-scholarship.pitt.edu/13633/1/ETD_zgz.v2.pdf
genre Methane hydrate
genre_facet Methane hydrate
op_relation http://d-scholarship.pitt.edu/13633/1/ETD_zgz.v2.pdf
Zhang, Guozhen (2012) Computational Studies of Chemical Systems: I. A Molecular Dynamics Simulation of Methane Hydrate; II. Theoretical Investigation of Water Loading on a Pyrophyllite (001) Surface. Doctoral Dissertation, University of Pittsburgh. (Unpublished)
_version_ 1776201715750535168