Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022
Abstract Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant linea...
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European Centre for Disease Control and Prevention (ECDC)
2022
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ftunivoulu:oai:oulu.fi:nbnfi-fe2022092660185 2023-07-30T04:05:49+02:00 Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 Lindh, E. (Erika) Smura, T. (Teemu) Blomqvist, S. (Soile) Liitsola, K. (Kirsi) Vauhkonen, H. (Hanna) Savolainen, L. (Laura) Ikonen, J. (Jaana) Ronkainen, J. (Jukka) Taskila, J. (Jyri) Sakaranaho, P. (Pertti) Savolainen-Kopra, C. (Carita) Vapalahti, O. (Olli) Ikonen, N. (Niina) 2022 application/pdf http://urn.fi/urn:nbn:fi-fe2022092660185 eng eng European Centre for Disease Control and Prevention (ECDC) info:eu-repo/semantics/openAccess © The Author(s) 2022. This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence and indicate if changes were made. https://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion 2022 ftunivoulu 2023-07-08T20:00:10Z Abstract Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant lineage has a 5’-end of BA.1, a recombination breakpoint between orf1a and orf1b (nucleotide position 13,296–15,240) and a 3’-end of BA.2 including the S gene. We describe the available genomic and epidemiological data about this currently circulating recombinant XJ lineage. Article in Journal/Newspaper Northern Finland Jultika - University of Oulu repository |
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Open Polar |
collection |
Jultika - University of Oulu repository |
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ftunivoulu |
language |
English |
description |
Abstract Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant lineage has a 5’-end of BA.1, a recombination breakpoint between orf1a and orf1b (nucleotide position 13,296–15,240) and a 3’-end of BA.2 including the S gene. We describe the available genomic and epidemiological data about this currently circulating recombinant XJ lineage. |
format |
Article in Journal/Newspaper |
author |
Lindh, E. (Erika) Smura, T. (Teemu) Blomqvist, S. (Soile) Liitsola, K. (Kirsi) Vauhkonen, H. (Hanna) Savolainen, L. (Laura) Ikonen, J. (Jaana) Ronkainen, J. (Jukka) Taskila, J. (Jyri) Sakaranaho, P. (Pertti) Savolainen-Kopra, C. (Carita) Vapalahti, O. (Olli) Ikonen, N. (Niina) |
spellingShingle |
Lindh, E. (Erika) Smura, T. (Teemu) Blomqvist, S. (Soile) Liitsola, K. (Kirsi) Vauhkonen, H. (Hanna) Savolainen, L. (Laura) Ikonen, J. (Jaana) Ronkainen, J. (Jukka) Taskila, J. (Jyri) Sakaranaho, P. (Pertti) Savolainen-Kopra, C. (Carita) Vapalahti, O. (Olli) Ikonen, N. (Niina) Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 |
author_facet |
Lindh, E. (Erika) Smura, T. (Teemu) Blomqvist, S. (Soile) Liitsola, K. (Kirsi) Vauhkonen, H. (Hanna) Savolainen, L. (Laura) Ikonen, J. (Jaana) Ronkainen, J. (Jukka) Taskila, J. (Jyri) Sakaranaho, P. (Pertti) Savolainen-Kopra, C. (Carita) Vapalahti, O. (Olli) Ikonen, N. (Niina) |
author_sort |
Lindh, E. (Erika) |
title |
Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 |
title_short |
Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 |
title_full |
Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 |
title_fullStr |
Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 |
title_full_unstemmed |
Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022 |
title_sort |
genomic and epidemiological report of the recombinant xj lineage sars-cov-2 variant, detected in northern finland, january 2022 |
publisher |
European Centre for Disease Control and Prevention (ECDC) |
publishDate |
2022 |
url |
http://urn.fi/urn:nbn:fi-fe2022092660185 |
genre |
Northern Finland |
genre_facet |
Northern Finland |
op_rights |
info:eu-repo/semantics/openAccess © The Author(s) 2022. This is an open-access article distributed under the terms of the Creative Commons Attribution (CC BY 4.0) Licence. You may share and adapt the material, but must give appropriate credit to the source, provide a link to the licence and indicate if changes were made. https://creativecommons.org/licenses/by/4.0/ |
_version_ |
1772817983406604288 |